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Answer: Answer: Don't choose Novogene for your sequencing projects
9 months ago by Eric Lim ★ 2.1k
1
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1
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1.3k
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Answer: Answer: how to specify a specific conda environment in a specific rule with snakemake?
17 months ago by Eric Lim ★ 2.1k
3
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1
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4.4k
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Answer: Answer: Is it possible to pass command line arguments to python script in snakemake?
2.3 years ago by Eric Lim ★ 2.1k
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0
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2.1k
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Answer: Answer: Snakemake command line arguments
2.3 years ago by Eric Lim ★ 2.1k
2
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1
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2.1k
views
Answer: Answer: Anyone know any clever snakemake/SLURM tricks to run a big analysis with limited
2.3 years ago by Eric Lim ★ 2.1k
2
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1
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2.0k
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Answer: Answer: Missing Input files Error with snakemake pipeline
2.4 years ago by Eric Lim ★ 2.1k
4
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1
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4.1k
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Answer: A: Snakemake: Force execution of rules in a specific order - ignoring wildcards
4.2 years ago by Eric Lim ★ 2.1k
2
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0
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972
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Answer: C: Identifying codons from rna-seq data (bed/bam file)
4.4 years ago by Eric Lim ★ 2.1k
1
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1
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1.8k
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Answer: A: Remove character from Fasta IDs -- python
4.5 years ago by Eric Lim ★ 2.1k
4
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1
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2.5k
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Answer: A: how to index different genomes with snakemake with different parameters?
4.5 years ago by Eric Lim ★ 2.1k
5
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1
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9.4k
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Answer: A: Running python script in Snakemake without input/output
4.5 years ago by Eric Lim ★ 2.1k
0
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1
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2.5k
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Answer: A: concatenating FASTQ forward and reverse reads in Snakemake
4.6 years ago by Eric Lim ★ 2.1k
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0
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2.6k
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Answer: A: Biopython Bio.motifs: How to create a motif object with aligned sequences
4.6 years ago by Eric Lim ★ 2.1k
2
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0
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1.3k
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Answer: A: Is there a LIST of available drugs and their target proteins to download?
4.6 years ago by Eric Lim ★ 2.1k
0
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0
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1.8k
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Answer: A: How to concatenate .fa files from different directory
4.8 years ago by Eric Lim ★ 2.1k
2
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0
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7.9k
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Answer: A: Error installing bcl2fastq 2.20 in make step - Ubuntu 18.04
4.8 years ago by Eric Lim ★ 2.1k
2
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1
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963
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Answer: A: Biopython coding, sublist from list dependently by id
5.0 years ago by Eric Lim ★ 2.1k
0
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1
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2.4k
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Answer: C: How to mount my data into docker container through -v command?
5.0 years ago by Eric Lim ★ 2.1k
5
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1
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1.8k
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Answer: C: Why are the sum of all exons so much longer than CDS?
5.1 years ago by Eric Lim ★ 2.1k
0
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0
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2.2k
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Answer: A: Best Amazon Machine Image (AMI) for bioinformatics
5.2 years ago by Eric Lim ★ 2.1k
1
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0
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2.1k
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Answer: A: Running RNA mats pipeline using fastq files as input ,unable to generate star in
5.2 years ago by Eric Lim ★ 2.1k
7
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1
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6.4k
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Answer: A: How to make your snakefiles self-documenting
updated 5.2 years ago by 47k • written 7.5 years ago by ★ 2.1k
4
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2
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9.8k
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Answer: A: MaxEntScan score interpretation
5.2 years ago by Eric Lim ★ 2.1k
2
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1
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3.2k
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Answer: A: How to write all the possible translation into a new fasta file?
5.3 years ago by Eric Lim ★ 2.1k
1
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0
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6.0k
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Answer: A: How to write the output in snakefile (snakemake) for bowtie2-build
5.5 years ago by Eric Lim ★ 2.1k
2
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0
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4.2k
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Answer: A: Which database software is better for bioinformatics web development? MySQL or M
updated 5.6 years ago by 141k • written 5.6 years ago by ★ 2.1k
1
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0
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5.9k
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Answer: C: Get gene nams from ensembl ID or gene region
5.6 years ago by Eric Lim ★ 2.1k
3
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2
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2.0k
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Answer: A: Command to count reads in fastq file with last bases
5.7 years ago by Eric Lim ★ 2.1k
1
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1
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1.7k
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Answer: A: Finding polyA site from Ensembl GFF file
5.8 years ago by Eric Lim ★ 2.1k
5
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0
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2.1k
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Answer: A: <3000$ in funding for computer equipment. Should I save this for cloud computing
5.8 years ago by Eric Lim ★ 2.1k
1
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0
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8.8k
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Answer: A: RNASeq user experience with Novogene?
5.8 years ago by Eric Lim ★ 2.1k
0
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0
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2.9k
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Answer: A: plotting a expression data in figure
5.8 years ago by Eric Lim ★ 2.1k
0
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0
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1.5k
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Answer: A: Can't find chr1 in a large fasta file using samtools/htsjdk
5.8 years ago by Eric Lim ★ 2.1k
2
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0
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2.1k
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Answer: A: Best way to systematically select ENCODE data to download?
5.8 years ago by Eric Lim ★ 2.1k
1
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1
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3.1k
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Answer: A: samtools and docker
5.9 years ago by Eric Lim ★ 2.1k
5
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0
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3.4k
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Answer: A: changing the name of files
5.9 years ago by Eric Lim ★ 2.1k
3
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0
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14k
views
Answer: A: Biopython: SeqIO.write () function to write dictionary object to fasta file
5.9 years ago by Eric Lim ★ 2.1k
3
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1
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9.1k
views
Answer: A: Cannot install NumPy using pip and import it
6.0 years ago by Eric Lim ★ 2.1k
1
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0
replies
2.4k
views
Answer: A: How do you organize sequence data (FASTQs)?
6.0 years ago by Eric Lim ★ 2.1k
2
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0
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5.5k
views
Answer: A: STAR using splice junctions from SJ.out to find flanking exons (GRCh37)
6.2 years ago by Eric Lim ★ 2.1k
1
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0
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2.6k
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Answer: A: remove sequences with non-canonical nucleotides from fasta file
6.2 years ago by Eric Lim ★ 2.1k
1
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1
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2.4k
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Answer: A: I'm putting a pipeline into docker, where do I store the tar files for my depend
6.3 years ago by Eric Lim ★ 2.1k
0
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0
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1.6k
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Answer: A: Doing RNA folding online for 1200 nt long sequence
6.3 years ago by Eric Lim ★ 2.1k
1
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0
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6.4k
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Answer: A: How to make your snakefiles self-documenting
7.2 years ago by Eric Lim ★ 2.1k
3
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1
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6.7k
views
Answer: A: Problem installing STAR on Mac OSX
7.5 years ago by Eric Lim ★ 2.1k
2
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1
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2.0k
views
Answer: A: TARGET Pediatric Cancer Code Table
7.5 years ago by Eric Lim ★ 2.1k
1
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1
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1.8k
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Answer: A: Parsing complex file for extraction of number range
7.5 years ago by Eric Lim ★ 2.1k
2
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1
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2.7k
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Answer: A: Two multifasta files with the same sequences, but different headers. How to chan
7.5 years ago by Eric Lim ★ 2.1k
3
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1
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2.1k
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Answer: C: How to slice or trim DNA sequence when it encounters NNNN or letters that repres
7.5 years ago by Eric Lim ★ 2.1k
1
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1
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4.2k
views
Answer: A: How to keep information from both files when I intersect them?
7.5 years ago by Eric Lim ★ 2.1k
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