User: syrttgump

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syrttgump30
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New User
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USA/Newark/New Jersey Institute of Technology
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2 years, 5 months ago
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4 years, 5 months ago
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Posts by syrttgump

<prev • 13 results • page 2 of 2 • next >
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Does CDS, start_codon and stop_codon in gtf affect transcriptome assembly by StringTie?
... Hi All. I am using StringTie to assemble transcriptome from my RNA-Seq data. The question is that if I use refSeq as reference annotation which was download from UCSC genome browser website, does the CDS, start codon and stop codon segments in that gtf file will affect transcriptome assembly? Like w ...
gtf annotation stringtie rna-seq assembly written 4.0 years ago by syrttgump30 • updated 4.0 years ago by Amitm1.9k
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Comment: C: distance between two genes
... This method may not work if genes have many exons, that mean one gene may have many start points and end points. ...
written 4.3 years ago by syrttgump30
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Error when install ggbio
... Hi everyone, I am using the newest version of R and trying to install ggbio, here is my problem: > biocLite("ggbio") BioC_mirror: https://bioconductor.org Using Bioconductor 3.2 (BiocInstaller 1.20.1), R 3.2.3 (2015-12-10). Installing package(s) ‘ggbio’ % Total % Received % Xferd Average ...
latest ggbio ggplot written 4.4 years ago by syrttgump30 • updated 2.7 years ago by Biostar ♦♦ 20

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Popular Question 2.8 years ago, created a question with more than 1,000 views. For Error when install ggbio

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