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1.5k
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Answer:
Answer: RnBeads SLURM submission problem.
3.7 years ago by
Ido Tamir
5.2k
0
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0
replies
1.7k
views
Answer:
A: New data transformation tool for Windows and Mac
4.4 years ago by
Ido Tamir
5.2k
1
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0
replies
2.6k
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Answer:
A: RNA-Seq differential gene expression without biological and technical replicates
4.6 years ago by
Ido Tamir
5.2k
1
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1
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3.0k
views
Answer:
C: How to get DE genes without replicates using EdgeR
4.6 years ago by
Ido Tamir
5.2k
1
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1
reply
1.3k
views
Answer:
A: How many of the reads end up being counted by HTSeq count
4.6 years ago by
Ido Tamir
5.2k
1
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0
replies
1.6k
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Answer:
A: How can I extract the sequencing reads containing a specific linker/tag?
4.7 years ago by
Ido Tamir
5.2k
0
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0
replies
1.1k
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Answer:
A: Adding annotations to the bam file from the txt file
4.7 years ago by
Ido Tamir
5.2k
0
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1
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1.5k
views
Answer:
A: HTseq does not generate any counts file
5.1 years ago by
Ido Tamir
5.2k
1
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0
replies
2.2k
views
Answer:
A: How to average different rows of different groups?
updated 5.1 years ago by
Ram
44k • written 10.7 years ago by
Ido Tamir
5.2k
2
votes
0
replies
3.0k
views
Answer:
A: Overlaid XY plot with two different colors for control and target genes
updated 5.1 years ago by
Ram
44k • written 10.8 years ago by
Ido Tamir
5.2k
2
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1
reply
17k
views
Answer:
A: Binning Of Chromosome Data
updated 5.2 years ago by
Ram
44k • written 11.8 years ago by
Ido Tamir
5.2k
1
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1
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24k
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Answer:
A: ggplot second y-axis: how to specify a secondary axis if I don't want to scale m
5.2 years ago by
Ido Tamir
5.2k
1
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0
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3.3k
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Answer:
A: NGS Data Storage Best Practices (Clinical)
5.2 years ago by
Ido Tamir
5.2k
1
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0
replies
10k
views
Answer:
A: Does Illumina Undetermined Fastq files contain barcodes
updated 5.2 years ago by
Ram
44k • written 9.2 years ago by
Ido Tamir
5.2k
1
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0
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9.2k
views
Answer:
A: Number of aligned reads in exon, intron ...
updated 5.3 years ago by
Ram
44k • written 10.8 years ago by
Ido Tamir
5.2k
0
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4
replies
7.5k
views
Answer:
A: Non-Annotated Long Noncoding Rna Candidates
updated 5.4 years ago by
Ram
44k • written 13.4 years ago by
Ido Tamir
5.2k
4
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1
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4.6k
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Answer:
A: Quick Visual Inspection Of Mapping Images For A List Of Regions
updated 5.4 years ago by
Ram
44k • written 13.6 years ago by
Ido Tamir
5.2k
3
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0
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2.1k
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Answer:
A: More informative GSEA enrichment ggplot
5.5 years ago by
Ido Tamir
5.2k
1
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0
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5.3k
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Answer:
A: Rsamtools-Countoverlaps
updated 5.7 years ago by
Ram
44k • written 13.5 years ago by
Ido Tamir
5.2k
2
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4
replies
6.0k
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Answer:
A: How To Create A Matrix In R?
updated 5.7 years ago by
Ram
44k • written 13.5 years ago by
Ido Tamir
5.2k
0
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0
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1.9k
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Answer:
A: Statistics on differentially expressed genes
5.9 years ago by
Ido Tamir
5.2k
2
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1
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15k
views
Answer:
A: How should I handle the raw reads with failed per base sequence content in fastQ
5.9 years ago by
Ido Tamir
5.2k
3
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0
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6.3k
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Answer:
A: Extract overrepresented sequences from fastq or fastqc
6.0 years ago by
Ido Tamir
5.2k
0
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1
reply
2.3k
views
Answer:
A: How to take out sequences with barcode?
6.0 years ago by
Ido Tamir
5.2k
2
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0
replies
10k
views
Answer:
A: How To Get Gene Regions +3Kb Upstream
updated 6.1 years ago by
Ram
44k • written 12.4 years ago by
Ido Tamir
5.2k
3
votes
0
replies
6.0k
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Answer:
A: FastQC:"Per Base Sequence Quality"
6.5 years ago by
Ido Tamir
5.2k
2
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0
replies
4.8k
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Answer:
A: Markduplicates in RNASEQ
7.2 years ago by
Ido Tamir
5.2k
1
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1
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4.3k
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Answer:
A: Paired end vs Single end Differential gene expression analysis
7.3 years ago by
Ido Tamir
5.2k
1
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0
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2.2k
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Answer:
A: ggplot expression values as function of samples and classes
7.5 years ago by
Ido Tamir
5.2k
0
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1
reply
2.0k
views
Answer:
A: wrong bam file format
7.6 years ago by
Ido Tamir
5.2k
0
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0
replies
3.3k
views
Answer:
A: FPKM vs READ COUNT
7.7 years ago by
Ido Tamir
5.2k
3
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1
reply
2.6k
views
Answer:
A: R multiple parameters
7.8 years ago by
Ido Tamir
5.2k
1
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1
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2.8k
views
Answer:
A: How to run Galaxy pipeline using a python code (is there a module, package for g
8.0 years ago by
Ido Tamir
5.2k
1
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0
replies
2.8k
views
Answer:
A: read quality of sequence by fastqc
8.5 years ago by
Ido Tamir
5.2k
3
votes
0
replies
3.2k
views
Answer:
A: Defining ChIP-seq target genes: is there a robust cut-off?
9.0 years ago by
Ido Tamir
5.2k
4
votes
0
replies
16k
views
Answer:
Answer: Easiest way to convert python script to web application
updated 2.5 years ago by
Ram
44k • written 9.1 years ago by
Ido Tamir
5.2k
0
votes
0
replies
7.2k
views
Answer:
A: Bcl to fastq conversion problem in bcl2fastq-2.17
9.3 years ago by
Ido Tamir
5.2k
1
vote
0
replies
2.0k
views
Answer:
Answer: Rnaseq calibration dataset
updated 2.4 years ago by
Ram
44k • written 9.4 years ago by
Ido Tamir
5.2k
0
votes
1
reply
3.8k
views
Answer:
Answer: Rank-based GO enrichment packages for R?
updated 2.4 years ago by
Ram
44k • written 9.4 years ago by
Ido Tamir
5.2k
0
votes
0
replies
3.8k
views
Answer:
Answer: a question about some "basic numbers" for rna-seq experiments
updated 2.2 years ago by
Ram
44k • written 9.6 years ago by
Ido Tamir
5.2k
2
votes
1
reply
3.7k
views
Answer:
A: What is the appropriate approach for ChIPseq protein genome occupancy % calculat
9.6 years ago by
Ido Tamir
5.2k
1
vote
0
replies
3.6k
views
Answer:
Answer: Fundamental flaw in ngs.plot - how to overcome?C
updated 2.2 years ago by
Ram
44k • written 9.7 years ago by
Ido Tamir
5.2k
1
vote
1
reply
129k
views
Answer:
Answer: How to calculate "fold changes" in gene expression?
updated 2.0 years ago by
Ram
44k • written 9.8 years ago by
Ido Tamir
5.2k
1
vote
0
replies
1.7k
views
Answer:
Answer: skewed cuffdiff result
updated 2.0 years ago by
Ram
44k • written 9.8 years ago by
Ido Tamir
5.2k
0
votes
1
reply
3.6k
views
Answer:
Answer: Code for looking for overlaps
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
Ido Tamir
5.2k
1
vote
0
replies
8.9k
views
Answer:
Answer: htseq-count: -s reverse vs -s stranded
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
Ido Tamir
5.2k
2
votes
1
reply
2.3k
views
Answer:
A: Heat map with position
9.8 years ago by
Ido Tamir
5.2k
1
vote
0
replies
1.7k
views
Answer:
Answer: Grouping\Clustering miRNAs in non-overlapped groups
updated 2.6 years ago by
Ram
44k • written 9.8 years ago by
Ido Tamir
5.2k
0
votes
0
replies
10k
views
Answer:
A: Chip-Seq - Peak caller for broad enrichment of histone modifications?
9.8 years ago by
Ido Tamir
5.2k
1
vote
1
reply
2.3k
views
Answer:
A: Isaac Aligner with Solexa data fails
9.9 years ago by
Ido Tamir
5.2k
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