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1
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2
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546
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What is the best aligner for stranded RNASeq
aligner stranded RNAseq
updated 11 months ago by 13k • written 11 months ago by ▴ 360
0
votes
1
reply
527
views
find mouse homologs to human long non coding rnas
human lncnra homologs mouse
updated 15 months ago by ▴ 260 • written 15 months ago by ▴ 360
0
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1
reply
4.1k
views
Comment: C: impute2 output files to vcf
4.4 years ago by tarek.mohamed ▴ 360
1
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0
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4.1k
views
Comment: C: impute2 output files to vcf
4.4 years ago by tarek.mohamed ▴ 360
0
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1
reply
4.1k
views
Comment: C: impute2 output files to vcf
4.4 years ago by tarek.mohamed ▴ 360
0
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1
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4.1k
views
Comment: C: impute2 output files to vcf
4.4 years ago by tarek.mohamed ▴ 360
4
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9
replies
4.1k
views
impute2 output files to vcf
vcf impute2
updated 13 months ago by 43k • written 4.4 years ago by ▴ 360
2
votes
5
replies
2.0k
views
Minion reads error rate for indels and snps
minion error rate
updated 4.8 years ago by 20 • written 4.9 years ago by ▴ 360
0
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1
reply
2.0k
views
Comment: C: Minion reads error rate for indels and snps
4.9 years ago by tarek.mohamed ▴ 360
0
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1
reply
4.4k
views
using tximport to prepare salmon quantification files for DEG analysis
RNA-Seq tximport
updated 5.0 years ago by 20 • written 6.0 years ago by ▴ 360
0
votes
1
reply
2.5k
views
Rsubread versus BWA ( Burrows-Wheeler Alignmener) for whole genome alignment
Rsubread BWA NGS
updated 5.0 years ago by ★ 7.0k • written 7.6 years ago by ▴ 360
2
votes
2
replies
3.0k
views
lgen to ped using plink
plink lgen mismatch
updated 5.2 years ago by 11k • written 6.6 years ago by ▴ 360
3
votes
3
replies
6.0k
views
Nanopore SNP and indels calling tool
snp nanopore indel-calling
updated 10 months ago by 43k • written 5.8 years ago by ▴ 360
4
votes
1
reply
2.8k
views
structural variant vcf file comparison
vcf SV
updated 5.4 years ago by 47k • written 5.4 years ago by ▴ 360
0
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0
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1.1k
views
Comment: C: Using one bam file with huge coverage, How to generate several bam files with di
5.6 years ago by tarek.mohamed ▴ 360
1
vote
2
replies
1.1k
views
Using one bam file with huge coverage, How to generate several bam files with different coverage
bam filter SNPs caller
updated 5.6 years ago by 47k • written 5.6 years ago by ▴ 360
0
votes
1
reply
10k
views
Comment: C: bcftools mpileup output format
5.6 years ago by tarek.mohamed ▴ 360
3
votes
3
replies
10k
views
bcftools mpileup output format
bcftools mpileup
5.6 years ago by tarek.mohamed ▴ 360
0
votes
3
replies
2.0k
views
Percent identity plot
precent identitiy alignment plot
updated 5.7 years ago by 35k • written 5.7 years ago by ▴ 360
0
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0
replies
2.8k
views
Comment: C: Long DNA reads aligned
5.8 years ago by tarek.mohamed ▴ 360
0
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1
reply
2.8k
views
Comment: C: Long DNA reads aligned
5.8 years ago by tarek.mohamed ▴ 360
4
votes
6
replies
2.8k
views
Long DNA reads aligned
nanopore
updated 5.8 years ago by 47k • written 5.8 years ago by ▴ 360
0
votes
4
replies
5.4k
views
How to extract raw genotype calls from idat or gtc illumina files
gtc files idat files raw genotype calls
updated 5.8 years ago by ▴ 390 • written 6.7 years ago by ▴ 360
0
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0
replies
1.2k
views
Comment: C: amino acid alteration position for SNPs using biomart
5.8 years ago by tarek.mohamed ▴ 360
3
votes
2
replies
1.2k
views
amino acid alteration position for SNPs using biomart
biomart snps locations aminoacids
updated 5.8 years ago by 8.3k • written 5.8 years ago by ▴ 360
0
votes
9
replies
2.5k
views
How to increase the speed of subread for DNA whole genome sequence
subread speed DNA sequence
updated 5.9 years ago by ▴ 20 • written 7.6 years ago by ▴ 360
0
votes
1
reply
1.8k
views
Plotting linkage equilibrium results
linkage disequilibrium plink plotting LD heatmap
updated 6.3 years ago by ▴ 990 • written 6.3 years ago by ▴ 360
0
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0
replies
7.7k
views
Comment: C: linkage disequilibrium analysis
6.3 years ago by tarek.mohamed ▴ 360
0
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1
reply
7.7k
views
Comment: C: linkage disequilibrium analysis
6.4 years ago by tarek.mohamed ▴ 360
5
votes
8
replies
7.7k
views
linkage disequilibrium analysis
LD SNPs different chromosomes
updated 2.7 years ago by 87k • written 6.4 years ago by ▴ 360
0
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0
replies
1.2k
views
Answer: A: SNPs and Gene Expression
6.5 years ago by tarek.mohamed ▴ 360
0
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0
replies
2.1k
views
Comment: C: counting the reads that mapped to a part of transcriptome
6.5 years ago by tarek.mohamed ▴ 360
0
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1
reply
2.1k
views
Answer: A: counting the reads that mapped to a part of transcriptome
6.5 years ago by tarek.mohamed ▴ 360
3
votes
0
replies
31k
views
Comment: C: How is the design in DESeq2 work?
6.5 years ago by tarek.mohamed ▴ 360
6
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2
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31k
views
Comment: C: How is the design in DESeq2 work?
6.5 years ago by tarek.mohamed ▴ 360
0
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1
reply
2.0k
views
Answer: A: How to start analyzing next-generation DNA and RNA sequencing data?
6.5 years ago by tarek.mohamed ▴ 360
1
vote
3
replies
3.2k
views
compare genotypes in two vcf files
vcf genotype
updated 13 months ago by 43k • written 6.6 years ago by ▴ 360
0
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0
replies
3.6k
views
Comment: C: PLINK2 recode ped flag issue
6.5 years ago by tarek.mohamed ▴ 360
0
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1
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3.6k
views
Answer: A: PLINK2 recode ped flag issue
6.5 years ago by tarek.mohamed ▴ 360
0
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0
replies
2.6k
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Answer: A: Using GAGE to Analyze Pathway Enrichment Directly from Fold Change Data
6.5 years ago by tarek.mohamed ▴ 360
1
vote
1
reply
1.6k
views
Answer: A: Converting numeric to alphanumeric allele codes
6.5 years ago by tarek.mohamed ▴ 360
0
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0
replies
1.2k
views
Answer: A: Counting read ends in RNA-Seq
6.5 years ago by tarek.mohamed ▴ 360
0
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0
replies
2.1k
views
Comment: C: NGS alignment image drawing
6.6 years ago by tarek.mohamed ▴ 360
8
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1
reply
7.8k
views
Answer: C: efetch error LWP::Protocol::https not installed
6.6 years ago by tarek.mohamed ▴ 360
0
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1
reply
3.6k
views
Comment: C: Download snps within 1Mb from gene
6.6 years ago by tarek.mohamed ▴ 360
0
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0
replies
2.0k
views
Answer: A: List of accession numbers for nucleotide sequences to protein sequences using R
6.6 years ago by tarek.mohamed ▴ 360
0
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0
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1.5k
views
Comment: C: Finding specific subsets of genes related with known transcription factors
6.6 years ago by tarek.mohamed ▴ 360
1
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2
replies
18k
views
Comment: C: Downloading gtf file for RefSeq
6.6 years ago by tarek.mohamed ▴ 360
0
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1
reply
18k
views
Comment: A: Downloading gtf file for RefSeq
6.6 years ago by tarek.mohamed ▴ 360
0
votes
1
reply
1.7k
views
Comment: C: Converting raw counts or DEseq2 output to TxDb container
6.6 years ago by tarek.mohamed ▴ 360
99 results • Page 1 of 2
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