User: coly_fu

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coly_fu0
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Posts by coly_fu

<prev • 5 results • page 1 of 1 • next >
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Comment: C: How to run Solve3.4 on a server alone
... I have encountered the same error. I think it is a bug, because I run with the non cluster mode but the pipeline still try to get parameters from the cluster arguments xml file. ...
written 4 weeks ago by coly_fu0
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Answer: A: What's the difference between weighted Fst and mean Fst from VCFtools?
... Maybe I have found the answer. The weighted Fst was just calculated in a window mode. So weighted Fst = sum(numerators) / sum(denominator) when mean Fst = average per site Fst. So weighted Fst has more weight on sites have a bigger between population variance. Is it? ...
written 2.4 years ago by coly_fu0
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What's the difference between weighted Fst and mean Fst from VCFtools?
... Hi, there, I have got two Fst estimators from VCFtools, the mean and weighted. Since there's a big difference between them, I can't decide to use which one in my study. I have spent hours to Google, but still have no idea yet. I need your help, thank you. ...
vcftools weighted fst mean fst written 2.4 years ago by coly_fu0
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Comment: C: genetic distance for iHS or XP-EHH
... Thank you. I also have thought about making a fake genetic distance according to physic map. But will it make any difference to the result? Is there any other solution? such as by calculating recombination rate.         ...
written 3.8 years ago by coly_fu0
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genetic distance for iHS or XP-EHH
... The selscan need a mapfile which contains genetic distance when calculating iHS or XPEHH. But how to deal with non-model species without genetic map? ...
genetic distance ihs xp-ehh written 3.8 years ago by coly_fu0 • updated 3.8 years ago by Katalobo10

Latest awards to coly_fu

Popular Question 2.4 years ago, created a question with more than 1,000 views. For genetic distance for iHS or XP-EHH
Popular Question 2.4 years ago, created a question with more than 1,000 views. For What's the difference between weighted Fst and mean Fst from VCFtools?

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