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Comment: Comment: Can index hopping lead to more reads in samples?
18 days ago by Assa Yeroslaviz ★ 1.8k
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0
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512
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Comment: Comment: Can index hopping lead to more reads in samples?
18 days ago by Assa Yeroslaviz ★ 1.8k
0
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1
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512
views
Comment: Comment: Can index hopping lead to more reads in samples?
18 days ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
512
views
Comment: Comment: Can index hopping lead to more reads in samples?
18 days ago by Assa Yeroslaviz ★ 1.8k
0
votes
0
replies
512
views
Comment: Comment: Can index hopping lead to more reads in samples?
18 days ago by Assa Yeroslaviz ★ 1.8k
1
vote
9
replies
512
views
Can index hopping lead to more reads in samples?
index-hopping NovoSeq illumina NGS Seqeucning
18 days ago by Assa Yeroslaviz ★ 1.8k
0
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0
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246
views
What does it means, when 2-direction perturbed pathways are identified in the gage enrichment analysis?
r pathway go-enrichment gage
21 days ago by Assa Yeroslaviz ★ 1.8k
0
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0
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263
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Comment: Comment: annotating single-cell clusters from gene lists
8 weeks ago by Assa Yeroslaviz ★ 1.8k
0
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2
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263
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annotating single-cell clusters from gene lists
annotation FindAllMarkers Seurat cell-type
updated 8 weeks ago by 43k • written 8 weeks ago by ★ 1.8k
0
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0
replies
132
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Correlating Chip-Seq and proteimics results
chip-seq correlations proteomics
12 weeks ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
184
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Understanding Homer output for makeTagDirectory
chip-seq peaks homer makeTagDirectory
3 months ago by Assa Yeroslaviz ★ 1.8k
3
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4
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553
views
split sequences into their codons in a table
R fasta codon-table
3 months ago by Assa Yeroslaviz ★ 1.8k
1
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0
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553
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Answer: Answer: split sequences into their codons in a table
3 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
151
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cross-correlation peak at position 0 when calculating ChIp-Seq
cross-correlation peak chip-seq phantompeak ChIPseeker
3 months ago by Assa Yeroslaviz ★ 1.8k
1
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1
reply
270
views
Annotating peak using Chipseeker for non-model organism
GenomicFeatures chipseq chipseeker annoDB TxDb
updated 3 months ago by 13k • written 3 months ago by ★ 1.8k
1
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8
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1.4k
views
counts of cite-seq-count vs. cellrenager varies tremendously
citeseq-count cellranger cite-seq scRNA-seq
updated 4 months ago by 81k • written 9 months ago by ★ 1.8k
0
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0
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243
views
extracting Uniprot IDs for Kegg pathways
mapping uniprot R kegg clusterprofiler
4 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
573
views
Comment: Comment: Plotting gene Expression per pathway
6 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
573
views
Comment: Comment: Plotting gene Expression per pathway
6 months ago by Assa Yeroslaviz ★ 1.8k
1
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4
replies
573
views
Plotting gene Expression per pathway
GO-enrichment gene-expression R ggplot RNA-seq
6 months ago by Assa Yeroslaviz ★ 1.8k
3
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6
replies
837
views
summarize consecutive columns over a data frame
tidyverse r offtopic
updated 7 months ago by 43k • written 7 months ago by ★ 1.8k
0
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1
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837
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Comment: Comment: summarize consecutive columns over a data frame
7 months ago by Assa Yeroslaviz ★ 1.8k
1
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3
replies
788
views
trajectory-like graph for a data frame
trajectory rna-seq tidyverse r velocity
updated 7 months ago by ★ 16k • written 7 months ago by ★ 1.8k
0
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1
reply
788
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Comment: Comment: trajectory-like graph for a data frame
7 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
1.4k
views
Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
1.4k
views
Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
585
views
Comment: Comment: WGS sequencing data based proteomics analysis
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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4
replies
585
views
WGS sequencing data based proteomics analysis
workflow UniProt proteomics WGS RNA-Seq
updated 9 months ago by ★ 1.1k • written 9 months ago by ★ 1.8k
1
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1
reply
6.5k
views
Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
6.5k
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Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
6.5k
views
Answer: Answer: scRNA-seq CITE-seq-count bioinformatics
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
396
views
Comment: Comment: Checking significance in trend of time-series analysis for count data
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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2
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396
views
Checking significance in trend of time-series analysis for count data
glm RNA-Seq time-series
9 months ago by Assa Yeroslaviz ★ 1.8k
0
votes
1
reply
837
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
9 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
837
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
9 months ago by Assa Yeroslaviz ★ 1.8k
1
vote
5
replies
837
views
annotating single-cell cluster from Drosophila melanogaster using SingleR?
SingleR celldex cell-type-annotations scRNA
updated 9 months ago by ★ 1.6k • written 10 months ago by ★ 1.8k
2
votes
2
replies
872
views
6 follow
Why runing scDblFinder before and after removing low QC cells gives different results
singleCellExperiment scDblFinder SMART-Seq
updated 4 months ago by ▴ 200 • written 10 months ago by ★ 1.8k
0
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1
reply
1.1k
views
what is the difference between FindVariableFeatures and FindAllMarkers?
Seurat single-cell FindVariableFeatures FindAllMarkers RNA-Seq
updated 10 months ago by 13k • written 10 months ago by ★ 1.8k
5
votes
2
replies
621
views
ERCC normalization within DESeq2
normalization ERCC size.factors DESeq2
updated 11 months ago by 81k • written 11 months ago by ★ 1.8k
8
votes
5
replies
2.2k
views
DESeq2 model matrix not full rank
full-rank model-matrix deseq2
updated 11 months ago by 141k • written 2.8 years ago by ★ 1.8k
1
vote
1
reply
455
views
Can I add labels to (some) cells in a plotColData from scater?
single-cell-experiment plotColData scater
12 months ago by Assa Yeroslaviz ★ 1.8k
1
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0
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455
views
Answer: Answer: Can I add labels to (some) cells in a plotColData from scater?
12 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
377
views
How to normalise ChIP-Seq samples using deeptools
bamCoverage deepTools
updated 10 months ago by 43k • written 12 months ago by ★ 1.8k
0
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1
reply
3.1k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
13 months ago by Assa Yeroslaviz ★ 1.8k
0
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1
reply
3.1k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
13 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
3.1k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
13 months ago by Assa Yeroslaviz ★ 1.8k
0
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2
replies
3.1k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
13 months ago by Assa Yeroslaviz ★ 1.8k
0
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0
replies
3.1k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
13 months ago by Assa Yeroslaviz ★ 1.8k
10
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17
replies
3.1k
views
How do one analyze data from SMART-Seq stranded kit (v4)?
single-cell smart-seq
updated 13 months ago by ★ 5.8k • written 13 months ago by ★ 1.8k
0
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0
replies
3.1k
views
Comment: Comment: How do one analyze data from SMART-Seq stranded kit (v4)?
13 months ago by Assa Yeroslaviz ★ 1.8k
558 results • Page 1 of 12
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