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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
12 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
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583
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Comment: Comment: trying to count a pattern in my fastq file using bbduk
12 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
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2.1k
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Comment: Comment: UMI-Tools knee-method has great influence on the results of white list
12 months ago by Assa Yeroslaviz ★ 1.9k
5
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12
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2.1k
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UMI-Tools knee-method has great influence on the results of white list
single-cell whitelist UMI RNA UMI-Tools
updated 11 months ago by 21k • written 12 months ago by ★ 1.9k
0
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3
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583
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trying to count a pattern in my fastq file using bbduk
java bbduk bbmap fastq
updated 12 months ago by 151k • written 12 months ago by ★ 1.9k
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0
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2.1k
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Comment: Comment: why renaming Idents in Seurat object doesn't work?
12 months ago by Assa Yeroslaviz ★ 1.9k
0
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3
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2.1k
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why renaming Idents in Seurat object doesn't work?
Seurat RenameIdents R
12 months ago by Assa Yeroslaviz ★ 1.9k
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0
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2.1k
views
Answer: Answer: why renaming Idents in Seurat object doesn't work?
updated 12 months ago by 45k • written 12 months ago by ★ 1.9k
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0
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1.9k
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Comment: Comment: Can index hopping lead to more reads in samples?
13 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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1.9k
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Comment: Comment: Can index hopping lead to more reads in samples?
13 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
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1.9k
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Comment: Comment: Can index hopping lead to more reads in samples?
13 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
1.9k
views
Comment: Comment: Can index hopping lead to more reads in samples?
13 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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1.9k
views
Comment: Comment: Can index hopping lead to more reads in samples?
13 months ago by Assa Yeroslaviz ★ 1.9k
1
vote
9
replies
1.9k
views
Can index hopping lead to more reads in samples?
index-hopping NovoSeq illumina NGS Seqeucning
13 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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449
views
What does it means, when 2-direction perturbed pathways are identified in the gage enrichment analysis?
r pathway go-enrichment gage
13 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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619
views
Comment: Comment: annotating single-cell clusters from gene lists
14 months ago by Assa Yeroslaviz ★ 1.9k
0
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2
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619
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annotating single-cell clusters from gene lists
annotation FindAllMarkers Seurat cell-type
updated 14 months ago by 45k • written 14 months ago by ★ 1.9k
0
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0
replies
294
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Correlating Chip-Seq and proteimics results
chip-seq correlations proteomics
15 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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494
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Understanding Homer output for makeTagDirectory
chip-seq peaks homer makeTagDirectory
15 months ago by Assa Yeroslaviz ★ 1.9k
3
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4
replies
1.1k
views
split sequences into their codons in a table
R fasta codon-table
16 months ago by Assa Yeroslaviz ★ 1.9k
1
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0
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1.1k
views
Answer: Answer: split sequences into their codons in a table
16 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
333
views
cross-correlation peak at position 0 when calculating ChIp-Seq
cross-correlation peak chip-seq phantompeak ChIPseeker
16 months ago by Assa Yeroslaviz ★ 1.9k
1
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1
reply
696
views
Annotating peak using Chipseeker for non-model organism
GenomicFeatures chipseq chipseeker annoDB TxDb
updated 16 months ago by 13k • written 16 months ago by ★ 1.9k
1
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8
replies
2.4k
views
counts of cite-seq-count vs. cellrenager varies tremendously
citeseq-count cellranger cite-seq scRNA-seq
updated 16 months ago by 88k • written 22 months ago by ★ 1.9k
0
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0
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511
views
extracting Uniprot IDs for Kegg pathways
mapping uniprot R kegg clusterprofiler
17 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
1.2k
views
Comment: Comment: Plotting gene Expression per pathway
19 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
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1.2k
views
Comment: Comment: Plotting gene Expression per pathway
19 months ago by Assa Yeroslaviz ★ 1.9k
1
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4
replies
1.2k
views
Plotting gene Expression per pathway
GO-enrichment gene-expression R ggplot RNA-seq
19 months ago by Assa Yeroslaviz ★ 1.9k
3
votes
6
replies
1.5k
views
summarize consecutive columns over a data frame
tidyverse r offtopic
updated 20 months ago by 45k • written 20 months ago by ★ 1.9k
0
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1
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1.5k
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Comment: Comment: summarize consecutive columns over a data frame
20 months ago by Assa Yeroslaviz ★ 1.9k
1
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3
replies
1.3k
views
trajectory-like graph for a data frame
trajectory rna-seq tidyverse r velocity
updated 20 months ago by ★ 18k • written 20 months ago by ★ 1.9k
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1
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1.3k
views
Comment: Comment: trajectory-like graph for a data frame
20 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
2.4k
views
Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
22 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
replies
2.4k
views
Comment: Comment: counts of cite-seq-count vs. cellrenager varies tremendously
22 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
997
views
Comment: Comment: WGS sequencing data based proteomics analysis
22 months ago by Assa Yeroslaviz ★ 1.9k
0
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4
replies
997
views
WGS sequencing data based proteomics analysis
workflow UniProt proteomics WGS RNA-Seq
updated 22 months ago by ★ 1.3k • written 22 months ago by ★ 1.9k
1
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1
reply
7.8k
views
Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
22 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
7.8k
views
Comment: Comment: scRNA-seq CITE-seq-count bioinformatics
22 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
7.8k
views
Answer: Answer: scRNA-seq CITE-seq-count bioinformatics
22 months ago by Assa Yeroslaviz ★ 1.9k
0
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0
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642
views
Comment: Comment: Checking significance in trend of time-series analysis for count data
22 months ago by Assa Yeroslaviz ★ 1.9k
0
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2
replies
642
views
Checking significance in trend of time-series analysis for count data
glm RNA-Seq time-series
22 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
1.5k
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
22 months ago by Assa Yeroslaviz ★ 1.9k
0
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1
reply
1.5k
views
Comment: Comment: annotating single-cell cluster from Drosophila melanogaster using SingleR?
22 months ago by Assa Yeroslaviz ★ 1.9k
1
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5
replies
1.5k
views
annotating single-cell cluster from Drosophila melanogaster using SingleR?
SingleR celldex cell-type-annotations scRNA
updated 22 months ago by ★ 1.6k • written 22 months ago by ★ 1.9k
2
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2
replies
1.8k
views
6 follow
Why runing scDblFinder before and after removing low QC cells gives different results
singleCellExperiment scDblFinder SMART-Seq
updated 17 months ago by ▴ 260 • written 23 months ago by ★ 1.9k
0
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1
reply
2.3k
views
what is the difference between FindVariableFeatures and FindAllMarkers?
Seurat single-cell FindVariableFeatures FindAllMarkers RNA-Seq
updated 23 months ago by 13k • written 23 months ago by ★ 1.9k
5
votes
2
replies
1.2k
views
ERCC normalization within DESeq2
normalization ERCC size.factors DESeq2
updated 2.0 years ago by 88k • written 2.0 years ago by ★ 1.9k
9
votes
5
replies
3.1k
views
DESeq2 model matrix not full rank
full-rank model-matrix deseq2
updated 2.0 years ago by 151k • written 3.9 years ago by ★ 1.9k
1
vote
1
reply
701
views
Can I add labels to (some) cells in a plotColData from scater?
single-cell-experiment plotColData scater
2.1 years ago by Assa Yeroslaviz ★ 1.9k
1
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0
replies
701
views
Answer: Answer: Can I add labels to (some) cells in a plotColData from scater?
2.1 years ago by Assa Yeroslaviz ★ 1.9k
614 results • Page 2 of 13
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