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0
votes
2
replies
374
views
Difference in count values depends on tool and reference genome version
RNA-seq
updated 9 weeks ago by
Ram
43k • written 9 weeks ago by
shome
▴ 10
4
votes
3
replies
303
views
Getting less DE genes when incorporating all samples
RNA-seq
differential-expression
deseq2
updated 9 weeks ago by
jv
★ 1.8k • written 9 weeks ago by
shome
▴ 10
0
votes
0
replies
296
views
How to find promoters (such as GC box and TATA box) in set of genes using bioinformatics analysis ?
promoter
motif
updated 4 months ago by
Ram
43k • written 4 months ago by
shome
▴ 10
2
votes
1
reply
639
views
DESEq2 results : low counts too many genes
RNA-seq
differential-expression
deseq2
updated 7 months ago by
Ram
43k • written 7 months ago by
shome
▴ 10
0
votes
5
replies
731
views
DESEQ2 analysis - PCA plot
RNA-seq
differential-expression
deseq2
updated 8 months ago by
bkleiboeker
▴ 370 • written 8 months ago by
shome
▴ 10
0
votes
1
reply
731
views
Comment:
Comment: DESEQ2 analysis - PCA plot
8 months ago by
shome
▴ 10
3
votes
1
reply
356
views
Reference genome to map embryonic mouse sequences
genome
RNA-seq
mouse
bulk
updated 12 months ago by
ATpoint
81k • written 12 months ago by
shome
▴ 10
0
votes
1
reply
961
views
Comment:
Comment: How to make scanpy read gene names to plot instead of read sequences
16 months ago by
shome
▴ 10
2
votes
3
replies
961
views
How to make scanpy read gene names to plot instead of read sequences
single-cell
scanpy
scRNA-seq
updated 16 months ago by
Ram
43k • written 16 months ago by
shome
▴ 10
0
votes
0
replies
310
views
Carrying out differential analysis for Abseq data
scRNAseq
RNAseq
Abseq
expression
Differential
16 months ago by
shome
▴ 10
0
votes
1
reply
387
views
Bioinformatics method to find which genes have GC and TATA boxes ?
GCbox
updated 16 months ago by
Ram
43k • written 22 months ago by
shome
▴ 10
0
votes
0
replies
1.1k
views
Comment:
Comment: What is cut-off for significance in DE analysis in sc-RNA seq data
23 months ago by
shome
▴ 10
3
votes
4
replies
1.1k
views
What is cut-off for significance in DE analysis in sc-RNA seq data
bulk
expression
differential
single
RNA-seq
cell
updated 23 months ago by
ATpoint
81k • written 23 months ago by
shome
▴ 10
0
votes
0
replies
757
views
Comment:
Comment: How to find which DE genes fall under statistically significant criteria using s
24 months ago by
shome
▴ 10
0
votes
1
reply
757
views
How to find which DE genes fall under statistically significant criteria using scanpy DEG analysis
RNA-seq
expression
cell
single
differential
scanpy
24 months ago by
shome
▴ 10
0
votes
0
replies
327
views
How to obtain all gene details from each of the clusters formed in UMAP
scanpy
Sc-RNA
2.1 years ago by
shome
▴ 10
0
votes
1
reply
784
views
Comment:
Comment: How to analyse RNA-seq data stored over certain period of time
2.2 years ago by
shome
▴ 10
1
vote
4
replies
784
views
How to analyse RNA-seq data stored over certain period of time
RNA-seq
bulk
updated 2.2 years ago by
rpolicastro
13k • written 2.2 years ago by
shome
▴ 10
0
votes
1
reply
587
views
Tools to detect the bacterial sequences from mouse RNA-seq data
single
RNA-seq
cell
updated 2.2 years ago by
Thind amarinder
▴ 340 • written 2.2 years ago by
shome
▴ 10
2
votes
1
reply
1.5k
views
How to combine UMAP plots from multiple datasets
scanpy
Seurat
scRNAseq
UMAP
updated 2.2 years ago by
rpolicastro
13k • written 2.2 years ago by
shome
▴ 10
1
vote
3
replies
1.1k
views
Finding ORFs from RNA-seq Sequence Data of eukaryotic species
nucleotide
rna
dna
genome
updated 3.1 years ago by
Dunois
★ 2.5k • written 3.1 years ago by
shome
▴ 10
0
votes
1
reply
641
views
Improving Classification accuracy and precision of classifier
protein
machinelearning
CNN
updated 3.3 years ago by
mahdiks
• 0 • written 3.3 years ago by
shome
▴ 10
3
votes
2
replies
753
views
Any other way to validate RNA-seq data if qPCR tests is not available?
sequencing
genome
updated 3.7 years ago by
Kevin Blighe
87k • written 3.7 years ago by
shome
▴ 10
1
vote
1
reply
583
views
Does DESeq2 can do hypothesis testing between multiple treatment groups or the tests just done between the genes ?
RNA-Seq
3.8 years ago by
shome
▴ 10
0
votes
1
reply
1.9k
views
Comment:
C: combine fasta sequences in combination from two different files
4.1 years ago by
shome
▴ 10
0
votes
1
reply
1.9k
views
Comment:
C: combine fasta sequences in combination from two different files
4.1 years ago by
shome
▴ 10
0
votes
1
reply
1.9k
views
Comment:
C: combine fasta sequences in combination from two different files
4.1 years ago by
shome
▴ 10
9
votes
12
replies
1.9k
views
combine fasta sequences in combination from two different files
unix
fasta
awk
shell
updated 4.1 years ago by
Pierre Lindenbaum
161k • written 4.1 years ago by
shome
▴ 10
0
votes
2
replies
1.9k
views
Comment:
C: combine fasta sequences in combination from two different files
4.1 years ago by
shome
▴ 10
0
votes
1
reply
1.9k
views
Comment:
C: combine fasta sequences in combination from two different files
4.1 years ago by
shome
▴ 10
0
votes
0
replies
1.5k
views
Comment:
C: No output when trying to obtain protein sequence from PDB file
4.2 years ago by
shome
▴ 10
0
votes
3
replies
1.5k
views
No output when trying to obtain protein sequence from PDB file
PDB
biopython
updated 4.2 years ago by
GenoMax
141k • written 4.2 years ago by
shome
▴ 10
0
votes
0
replies
735
views
pymol script to only select 5 chains within a distance from a reference and save the selection
pymol
visualisation
python
pymol scripting
4.5 years ago by
shome
▴ 10
0
votes
5
replies
2.7k
views
Downloading set of fasta sequences based on gene id
gene
sequence
geneid
fasta
updated 4.9 years ago by
vkkodali_ncbi
★ 3.7k • written 4.9 years ago by
shome
▴ 10
0
votes
0
replies
2.7k
views
Comment:
C: Downloading set of fasta sequences based on gene id
4.9 years ago by
shome
▴ 10
0
votes
0
replies
2.7k
views
Comment:
C: Downloading set of fasta sequences based on gene id
4.9 years ago by
shome
▴ 10
0
votes
1
reply
764
views
Determining which strain trinity contig belongs to after denovoassembly
RNA-Seq
assembly
SNP
5.0 years ago by
shome
▴ 10
1
vote
2
replies
1.4k
views
Meaning of alias in Sequence Read Archive
RNA-Seq
ncbi
updated 8.1 years ago by
GenoMax
141k • written 8.1 years ago by
shome
▴ 10
2
votes
1
reply
4.2k
views
How to find chromosome coordinates based on gene locus
gene
ncbi
genome
locus
updated 21 months ago by
Ram
43k • written 8.3 years ago by
shome
▴ 10
39 results • Page
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