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0
votes
2
replies
371
views
Difference in count values depends on tool and reference genome version
RNA-seq
updated 8 weeks ago by 43k • written 8 weeks ago by ▴ 10
4
votes
3
replies
298
views
Getting less DE genes when incorporating all samples
RNA-seq differential-expression deseq2
updated 8 weeks ago by ★ 1.8k • written 8 weeks ago by ▴ 10
0
votes
0
replies
293
views
How to find promoters (such as GC box and TATA box) in set of genes using bioinformatics analysis ?
promoter motif
updated 4 months ago by 43k • written 4 months ago by ▴ 10
2
votes
1
reply
628
views
DESEq2 results : low counts too many genes
RNA-seq differential-expression deseq2
updated 7 months ago by 43k • written 7 months ago by ▴ 10
0
votes
5
replies
725
views
DESEQ2 analysis - PCA plot
RNA-seq differential-expression deseq2
updated 8 months ago by ▴ 370 • written 8 months ago by ▴ 10
3
votes
1
reply
353
views
Reference genome to map embryonic mouse sequences
genome RNA-seq mouse bulk
updated 12 months ago by 81k • written 12 months ago by ▴ 10
2
votes
3
replies
950
views
How to make scanpy read gene names to plot instead of read sequences
single-cell scanpy scRNA-seq
updated 16 months ago by 43k • written 16 months ago by ▴ 10
0
votes
0
replies
306
views
Carrying out differential analysis for Abseq data
scRNAseq RNAseq Abseq expression Differential
16 months ago by shome ▴ 10
0
votes
1
reply
384
views
Bioinformatics method to find which genes have GC and TATA boxes ?
GCbox
updated 16 months ago by 43k • written 22 months ago by ▴ 10
3
votes
4
replies
1.1k
views
What is cut-off for significance in DE analysis in sc-RNA seq data
bulk expression differential single RNA-seq cell
updated 23 months ago by 81k • written 23 months ago by ▴ 10
0
votes
1
reply
753
views
How to find which DE genes fall under statistically significant criteria using scanpy DEG analysis
RNA-seq expression cell single differential scanpy
23 months ago by shome ▴ 10
0
votes
0
replies
324
views
How to obtain all gene details from each of the clusters formed in UMAP
scanpy Sc-RNA
2.1 years ago by shome ▴ 10
1
vote
4
replies
778
views
How to analyse RNA-seq data stored over certain period of time
RNA-seq bulk
updated 2.2 years ago by 13k • written 2.2 years ago by ▴ 10
0
votes
1
reply
583
views
Tools to detect the bacterial sequences from mouse RNA-seq data
single RNA-seq cell
updated 2.2 years ago by ▴ 340 • written 2.2 years ago by ▴ 10
2
votes
1
reply
1.5k
views
How to combine UMAP plots from multiple datasets
scanpy Seurat scRNAseq UMAP
updated 2.2 years ago by 13k • written 2.2 years ago by ▴ 10
1
vote
3
replies
1.1k
views
Finding ORFs from RNA-seq Sequence Data of eukaryotic species
nucleotide rna dna genome
updated 3.1 years ago by ★ 2.5k • written 3.1 years ago by ▴ 10
0
votes
1
reply
640
views
Improving Classification accuracy and precision of classifier
protein machinelearning CNN
updated 3.3 years ago by • 0 • written 3.3 years ago by ▴ 10
3
votes
2
replies
748
views
Any other way to validate RNA-seq data if qPCR tests is not available?
sequencing genome
updated 3.7 years ago by 87k • written 3.7 years ago by ▴ 10
1
vote
1
reply
578
views
Does DESeq2 can do hypothesis testing between multiple treatment groups or the tests just done between the genes ?
RNA-Seq
3.8 years ago by shome ▴ 10
9
votes
12
replies
1.8k
views
combine fasta sequences in combination from two different files
unix fasta awk shell
updated 4.1 years ago by 161k • written 4.1 years ago by ▴ 10
0
votes
3
replies
1.4k
views
No output when trying to obtain protein sequence from PDB file
PDB biopython
updated 4.2 years ago by 141k • written 4.2 years ago by ▴ 10
0
votes
0
replies
732
views
pymol script to only select 5 chains within a distance from a reference and save the selection
pymol visualisation python pymol scripting
4.5 years ago by shome ▴ 10
0
votes
5
replies
2.7k
views
Downloading set of fasta sequences based on gene id
gene sequence geneid fasta
updated 4.9 years ago by ★ 3.7k • written 4.9 years ago by ▴ 10
0
votes
1
reply
760
views
Determining which strain trinity contig belongs to after denovoassembly
RNA-Seq assembly SNP
5.0 years ago by shome ▴ 10
1
vote
2
replies
1.4k
views
Meaning of alias in Sequence Read Archive
RNA-Seq ncbi
updated 8.1 years ago by 141k • written 8.1 years ago by ▴ 10
2
votes
1
reply
4.2k
views
How to find chromosome coordinates based on gene locus
gene ncbi genome locus
updated 20 months ago by 43k • written 8.3 years ago by ▴ 10
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