User: Nitha

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Nitha10
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New User
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11 hours ago
Joined:
3 years, 10 months ago
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Posts by Nitha

<prev • 35 results • page 1 of 4 • next >
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Comment: C: Understanding Samtools Flagstat Output
... Thankyou@DevonRyan. Whether I have to delete this post and re-post as a new question? ...
written 4 days ago by Nitha10
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Answer: A: Understanding Samtools Flagstat Output
... @Devon Ryan, I had used two bam files of same samples (bam file obtained by two different ways 1. By using joined fastq files as input and 2. By using each fastq files for each steps) for alignment quality check using samtools falg stat. But i observed difference in duplicate numbers. The .bam fi ...
written 4 days ago by Nitha10
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samtools flagstat calculation
... Hi all, I have a doubt in samtools flagstat calculation, alignment quality check was done for the same samples but the alignment was done in different ways. Downloaded public available sample it was 80Gb fastq with Lane 1 and lane 2 which forward and reverse reads (paired end). 1. merged reads la ...
samtools written 7 weeks ago by Nitha10 • updated 7 weeks ago by Devon Ryan92k
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Comment: C: how to calculate unique read coverage in WGS of human
... @h.mon Thank you very much for the detailed explanation. ...
written 4 months ago by Nitha10
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Comment: C: how to calculate unique read coverage in WGS of human
... @h.mon Thanks you. I am using paired end sequence. Now the above link is working, could you please explain how the illumina calculating the coverage, and what they mentioning about the unique reads. How Does Illumina Calculate Human WGS Coverage? Illumina defines sequencing coverage as “the average ...
written 4 months ago by Nitha10
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Comment: C: how to calculate unique read coverage in WGS of human
... @genomax The link which had given is the technical note, which I had mentioned in my post. I couldn't understand the statement in the technical note [Illumina defines sequencing coverage as “the average coverage of unique reads across the non-N portion of the human genome.”]. could you explain it. ...
written 4 months ago by Nitha10
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how to calculate unique read coverage in WGS of human
... Hi All, I have to calculate the coverage for human WGS of illumina sequenced read. After reading the technique note of illumina I have some doubts in WGS coverage calculation of human sequence. ( https://www.illumina.com/content/dam/illumina-marketing/documents/products/technotes/hiseq-x-30x-cove ...
sequencing wgs next-gen human illumina written 4 months ago by Nitha10 • updated 4 months ago by h.mon28k
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Comment: C: Human Protein Structure Download
... Thank you. yes I have downloaded the available structures and remaining structures downloaded from ModBase. ...
written 2.5 years ago by Nitha10
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Removing redundancy in structure level
... Hi All, I have downloaded all available human proteome structure from PDB, normally there will be redundancy in structures (Different structures are deposited in PDB for single protein, how to download only non-redundant best models in bulk), facing trouble in removing the redundancy in structure l ...
protein structure pdb modebase redundancy written 2.5 years ago by Nitha10
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LIGSITEcsc-protein pocket identification
... I am facing trouble while installing the BALL library for running LigsiteCSC (http://projects.biotec.tu-dresden.de/pocket/download.html). When i run ./configure i got error: checking for QT headers... (not found!) No QT header files found! Please specify the path to the QT headers by passing the o ...
software error installation ball library written 2.6 years ago by Nitha10 • updated 2.6 years ago by WouterDeCoster42k

Latest awards to Nitha

Popular Question 2.4 years ago, created a question with more than 1,000 views. For Correspondance Analysis by using CodonW- codon usage biase
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Genome & Protein Retrival
Popular Question 2.4 years ago, created a question with more than 1,000 views. For CLC workbench- subtractive genomics
Popular Question 2.4 years ago, created a question with more than 1,000 views. For How to plot ENc Vs GC3 graph
Popular Question 2.4 years ago, created a question with more than 1,000 views. For Mauve tool, Genome alignment

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