User: Nitha

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Nitha10
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1 year, 2 months ago
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2 years, 7 months ago
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Posts by Nitha

<prev • 28 results • page 1 of 3 • next >
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Comment: C: Human Protein Structure Download
... Thank you. yes I have downloaded the available structures and remaining structures downloaded from ModBase. ...
written 15 months ago by Nitha10
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Removing redundancy in structure level
... Hi All, I have downloaded all available human proteome structure from PDB, normally there will be redundancy in structures (Different structures are deposited in PDB for single protein, how to download only non-redundant best models in bulk), facing trouble in removing the redundancy in structure l ...
protein structure pdb modebase redundancy written 15 months ago by Nitha10
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LIGSITEcsc-protein pocket identification
... I am facing trouble while installing the BALL library for running LigsiteCSC (http://projects.biotec.tu-dresden.de/pocket/download.html). When i run ./configure i got error: checking for QT headers... (not found!) No QT header files found! Please specify the path to the QT headers by passing the o ...
software error installation ball library written 16 months ago by Nitha10 • updated 16 months ago by WouterDeCoster31k
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Comparative analysis, genomic analysis of infectious bacteria
... Hi All, I am facing problem how to group the different types of strains and select representative strain to study. Eg: for chlamydia there are three human biovars and they are further listed into 1 to 15 serovars based on ompA gene (outer membrane protein) and each serovars contains different strain ...
genome sequence blast written 17 months ago by Nitha10 • updated 17 months ago by genebow120
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Comment: C: Correspondance Analysis by using CodonW- codon usage biase
... @Mianl Apologies for delay. Can I know which version of Codon W you are using (Because when i was working in windows it ask the personal choice). Please send me your mail ID so that I can send you all the details with pictures which explains the steps. Because here I am unable to attach all t ...
written 17 months ago by Nitha10
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Comment: C: Correspondance Analysis by using CodonW- codon usage biase
... Hi Minal, Thanks for making me clear. one more clarification, in what platform your working windows are Linux? 1) Reference set for 8 different species are identified and their are values are kept default in codonW. In my case, my organism was gram negative bacteria so I opted E.coli and perfor ...
written 17 months ago by Nitha10
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Comment: C: Correspondance Analysis by using CodonW- codon usage biase
... Please make it clear, so i can help you ...
written 17 months ago by Nitha10
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Comment: C: Correspondance Analysis by using CodonW- codon usage biase
... Hi Minal, Can you make it more clear about your needs. so far what you have done, had you calculated the codon indices? What exactly your looking for ? HEG or to do COA? If you give me an out line about your problem definitely I can help you. Nitha ...
written 17 months ago by Nitha10
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Human Protein Structure Download
... Hi All, How can i download the whole protein structure (PDB) for human proteins (Complete available protein Structure). Can anyone suggest me where and how to download the structures. Thanks, Nitha ...
gene pdb sequence written 20 months ago by Nitha10 • updated 20 months ago by genomax54k
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Comment: A: proteome download, human gut microbes
... No, my question whether I can download "whole protein sequence" in FASTA format of particular bacteria using their name. Like eg: using gene id or accession number we can use BATCH ENTREZ to download n number of gene sequence or protein sequence. ...
written 21 months ago by Nitha10

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