User: Nitha
Nitha • 10
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Posts by Nitha
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... @h.mon Thank you very much for the detailed explanation. ...
written 26 days ago by
Nitha • 10
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... @h.mon Thanks you. I am using paired end sequence. Now the above link is working, could you please explain how the illumina calculating the coverage, and what they mentioning about the unique reads.
How Does Illumina Calculate Human
WGS Coverage?
Illumina defines sequencing coverage as “the average
...
written 27 days ago by
Nitha • 10
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... @genomax The link which had given is the technical note, which I had mentioned in my post. I couldn't understand the statement in the technical note [Illumina defines sequencing coverage as “the average coverage of unique reads across the non-N portion of the human genome.”]. could you explain it. ...
written 27 days ago by
Nitha • 10
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... Hi All,
I have to calculate the coverage for human WGS of illumina sequenced read. After reading the technique note of illumina I have some doubts in WGS coverage calculation of human sequence.
( https://www.illumina.com/content/dam/illumina-marketing/documents/products/technotes/hiseq-x-30x-cove ...
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Comment:
C: Human Protein Structure Download
... Thank you. yes I have downloaded the available structures and remaining structures downloaded from ModBase. ...
written 2.2 years ago by
Nitha • 10
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... Hi All,
I have downloaded all available human proteome structure from PDB, normally there will be redundancy in structures (Different structures are deposited in PDB for single protein, how to download only non-redundant best models in bulk), facing trouble in removing the redundancy in structure l ...
written 2.2 years ago by
Nitha • 10
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... I am facing trouble while installing the BALL library for running LigsiteCSC (http://projects.biotec.tu-dresden.de/pocket/download.html).
When i run ./configure i got error:
checking for QT headers... (not found!)
No QT header files found! Please specify the path to the QT headers
by passing the o ...
written 2.3 years ago by
Nitha • 10
• updated
2.3 years ago by
WouterDeCoster ♦ 40k
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... Hi All,
I am facing problem how to group the different types of strains and select representative strain to study.
Eg: for chlamydia there are three human biovars and they are further listed into 1 to 15 serovars based on ompA gene (outer membrane protein) and each serovars contains different strain ...
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... @Mianl
Apologies for delay. Can I know which version of Codon W you are using (Because when i was working in windows it ask the personal choice). Please send me your mail ID so that I can send you all the details with pictures which explains the steps. Because here I am unable to attach all t ...
written 2.4 years ago by
Nitha • 10
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... Hi Minal,
Thanks for making me clear.
one more clarification, in what platform your working windows are Linux?
1) Reference set for 8 different species are identified and their are
values are kept default in codonW. In my case, my organism was gram
negative bacteria so I opted E.coli and perfor ...
written 2.4 years ago by
Nitha • 10
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