User: Nitha
Nitha • 10
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Posts by Nitha
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Comment:
C: Human Protein Structure Download
... Thank you. yes I have downloaded the available structures and remaining structures downloaded from ModBase. ...
written 13 months ago by
Nitha • 10
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... Hi All,
I have downloaded all available human proteome structure from PDB, normally there will be redundancy in structures (Different structures are deposited in PDB for single protein, how to download only non-redundant best models in bulk), facing trouble in removing the redundancy in structure l ...
written 13 months ago by
Nitha • 10
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... I am facing trouble while installing the BALL library for running LigsiteCSC (http://projects.biotec.tu-dresden.de/pocket/download.html).
When i run ./configure i got error:
checking for QT headers... (not found!)
No QT header files found! Please specify the path to the QT headers
by passing the o ...
written 14 months ago by
Nitha • 10
• updated
14 months ago by
WouterDeCoster ♦ 29k
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... Hi All,
I am facing problem how to group the different types of strains and select representative strain to study.
Eg: for chlamydia there are three human biovars and they are further listed into 1 to 15 serovars based on ompA gene (outer membrane protein) and each serovars contains different strain ...
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... @Mianl
Apologies for delay. Can I know which version of Codon W you are using (Because when i was working in windows it ask the personal choice). Please send me your mail ID so that I can send you all the details with pictures which explains the steps. Because here I am unable to attach all t ...
written 15 months ago by
Nitha • 10
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... Hi Minal,
Thanks for making me clear.
one more clarification, in what platform your working windows are Linux?
1) Reference set for 8 different species are identified and their are
values are kept default in codonW. In my case, my organism was gram
negative bacteria so I opted E.coli and perfor ...
written 15 months ago by
Nitha • 10
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... Please make it clear, so i can help you ...
written 15 months ago by
Nitha • 10
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... Hi Minal,
Can you make it more clear about your needs.
so far what you have done, had you calculated the codon
indices?
What exactly your looking for ? HEG or to do COA?
If you give me an out line about your problem definitely I can help you.
Nitha ...
written 15 months ago by
Nitha • 10
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... Hi All,
How can i download the whole protein structure (PDB) for human proteins (Complete available protein Structure). Can anyone suggest me where and how to download the structures.
Thanks,
Nitha ...
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... No, my question whether I can download "whole protein sequence" in FASTA format of particular bacteria using their name. Like eg: using gene id or accession number we can use BATCH ENTREZ to download n number of gene sequence or protein sequence. ...
written 19 months ago by
Nitha • 10
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