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3.1k
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Comment:
Comment: dN/dS in a tree (multiple genes)
16 months ago by
BlastedBadger
▴ 160
5
votes
2
replies
3.1k
views
dN/dS in a tree (multiple genes)
dN/dS
dNdS
KaKs
Phylogenetics
PAML
16 months ago by
BlastedBadger
▴ 160
0
votes
1
reply
582
views
Comment:
Comment: How can we Convert .smp files to .hmm files ?
21 months ago by
BlastedBadger
▴ 160
1
vote
0
replies
493
views
Answer:
Answer: Group rows in table based on column
21 months ago by
BlastedBadger
▴ 160
0
votes
0
replies
529
views
Comment:
Comment: Conserved domains in multiple sequence alignment
22 months ago by
BlastedBadger
▴ 160
0
votes
0
replies
424
views
Different ESS estimates of Tracer VS tracecomp
mcmc
ess
tracer
phylobayes
bayesian
21 months ago by
BlastedBadger
▴ 160
0
votes
0
replies
733
views
Answer:
Answer: Simulation of dna sequences through substitution rates
2.3 years ago by
BlastedBadger
▴ 160
2
votes
3
replies
923
views
Tool to visualize alignment comparisons / Alignment diff
alignment
visualization
diff
updated 2.3 years ago by
Wayne
★ 2.0k • written 2.3 years ago by
BlastedBadger
▴ 160
2
votes
0
replies
1.1k
views
Comment:
Comment: t-SNE analysis on multiple fasta files in R
2.3 years ago by
BlastedBadger
▴ 160
0
votes
0
replies
945
views
Answer:
Answer: Alignment of protein sequence to Pfam seed alignment
2.3 years ago by
BlastedBadger
▴ 160
0
votes
1
reply
841
views
Answer:
Answer: Simulation - Evolution of the number of genes
2.3 years ago by
BlastedBadger
▴ 160
0
votes
0
replies
517
views
Input alignment for Beast as an external *link* in the XML control file.
Beast
Beast2
beastGen
Beauti
3.3 years ago by
BlastedBadger
▴ 160
3
votes
2
replies
2.4k
views
Where has the R Ape 'chronogram' function gone (Non-Parametric Rate Smoothing)?
R
ape
chronogram
NPRS
Phylogenetic dating
updated 4.3 years ago by
Biostar
20 • written 6.8 years ago by
BlastedBadger
▴ 160
2
votes
0
replies
759
views
Answer:
A: Syntax highlighting for PAML's control files in Vim
4.4 years ago by
BlastedBadger
▴ 160
2
votes
1
reply
759
views
Syntax highlighting for PAML's control files in Vim
PAML
Vim
4.4 years ago by
BlastedBadger
▴ 160
1
vote
0
replies
8.4k
views
Answer:
A: Convert Nexus format to Newick format
4.7 years ago by
BlastedBadger
▴ 160
2
votes
0
replies
1.0k
views
Why is an hclust plot not ultrametric with "average" agglomeration method?
hierarchical clustering
R
5.2 years ago by
BlastedBadger
▴ 160
1
vote
1
reply
967
views
Comment:
C: Stratify phylogeny based on variables - e.g. which ST are represented by high %
5.2 years ago by
BlastedBadger
▴ 160
0
votes
0
replies
967
views
Comment:
C: Stratify phylogeny based on variables - e.g. which ST are represented by high %
5.2 years ago by
BlastedBadger
▴ 160
0
votes
0
replies
1.6k
views
Comment:
C: Extract species tree from the Ensembl Compara database
5.2 years ago by
BlastedBadger
▴ 160
1
vote
3
replies
1.6k
views
Extract species tree from the Ensembl Compara database
tree
EnsEMBL
database
updated 5.2 years ago by
Emily
23k • written 5.2 years ago by
BlastedBadger
▴ 160
2
votes
2
replies
3.9k
views
Get dS numbers _per branch_ with PAML codeml (or branch length estimates)
PAML
codeml
dS
substitution rates
phylogeny
updated 6.1 years ago by
al-ash
▴ 200 • written 7.5 years ago by
BlastedBadger
▴ 160
0
votes
0
replies
4.3k
views
Comment:
C: Convert SNP dataset from PACKEDANCESTRYMAP to plink (PED)
6.5 years ago by
BlastedBadger
▴ 160
0
votes
1
reply
4.3k
views
Comment:
C: Convert SNP dataset from PACKEDANCESTRYMAP to plink (PED)
6.5 years ago by
BlastedBadger
▴ 160
0
votes
4
replies
4.3k
views
Convert SNP dataset from PACKEDANCESTRYMAP to plink (PED)
SNP
plink
6.5 years ago by
BlastedBadger
▴ 160
1
vote
0
replies
2.4k
views
Answer:
A: Where has the R Ape 'chronogram' function gone (Non-Parametric Rate Smoothing)?
6.8 years ago by
BlastedBadger
▴ 160
2
votes
4
replies
1.8k
views
UPGMA method when tree leaves have different known ages
phylogeny
dating
UPGMA
molecular clock
time-tree
updated 6.9 years ago by
Michael
54k • written 6.9 years ago by
BlastedBadger
▴ 160
0
votes
1
reply
1.8k
views
Comment:
C: UPGMA method when tree leaves have different known ages
6.9 years ago by
BlastedBadger
▴ 160
1
vote
0
replies
1.2k
views
Answer:
A: Inconsistent query coordinates between chain and net alignments in UCSC
7.1 years ago by
BlastedBadger
▴ 160
2
votes
1
reply
1.2k
views
Inconsistent query coordinates between chain and net alignments in UCSC
alignment
chain
net
UCSC
7.1 years ago by
BlastedBadger
▴ 160
0
votes
0
replies
3.9k
views
Comment:
C: Get dS numbers _per branch_ with PAML codeml (or branch length estimates)
7.5 years ago by
BlastedBadger
▴ 160
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