User: missnc

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missnc10
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2 years, 6 months ago
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Posts by missnc

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merging per-transcript data for form per-gene data
... Hi! I have a set of 43,000 genbank accession numbers (NM_000014, NM_000015, NM_000016, NM_000017) for human transcripts. I am trying to run GENIE3, for which I believe I need the data to be in a per-gene rather than a per-transcript format. I am looking for a way to merge the microarray data I have ...
gene genie3 transcript genbank microarray written 2.5 years ago by missnc10
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Plotting copy number varation: amplification and deletion data from GISTIC
... Hi there,  I have carried out GISTIC on some Agilent 244K tumour data. I now have the G-scores for the regions significantly amplified or deleted across tumour samples. I was hoping to be able to produce a plot like figure 1A in the link below (apologies, I cannot directly put the figure into this ...
gistic cna copy number variation plotting R written 2.6 years ago by missnc10 • updated 22 months ago by sophiespo0
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Comment: C: Copy number variation plot (R package)
... Thank you very much for the information. Would you by any chance know a package that allows you to produce plots like the ones displayed in this question? I need to produce plots similar to those from GISTIC data and can't seem to find an easy way. ...
written 2.6 years ago by missnc10

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