User: signauncreal

gravatar for signauncreal
Reputation:
0
Status:
New User
Last seen:
4 years, 5 months ago
Joined:
4 years, 6 months ago
Email:
s***********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by signauncreal

<prev • 6 results • page 1 of 1 • next >
0
votes
2
answers
1.9k
views
2
answers
Comment: C: Filtering reads aligned to specific chromosome
... You are right, which is why i am trying to do what i described above. I do not want to map reads of the whole genome on chromosome 21. ...
written 4.4 years ago by signauncreal0
0
votes
2
answers
1.9k
views
2
answers
Comment: C: Filtering reads aligned to specific chromosome
... Im really sorry if im not expressing myself accurately. It is true that i want those file that align to chr21. Those i obtain with the the commands stated above. Also i want all unmapped reads and all split reads that map to chr21 (and somewhere else). The problem is not the extraction of those read ...
written 4.4 years ago by signauncreal0
0
votes
2
answers
1.9k
views
2
answers
Comment: C: Filtering reads aligned to specific chromosome
... Thank you for your quick answer: First of all, isn't it true that what you described can be solved simply by something like this (which is what i did): samtools view input.bam | awk '{if ($3==YourChromosomeNumber && $7== "=") print $0} > outfile.sam Correct me if im wrong or i am missin ...
written 4.4 years ago by signauncreal0
0
votes
2
answers
1.9k
views
2
answers
Filtering reads aligned to specific chromosome
... Hello, First of all: Im quite new to this field, so please apologize any unexact formulations or missing informations. i want to solve the following task: In order to save time, i want to do alignments not to the whole genome, but only to chromsome 21. My strategy so far consisted of the followi ...
bamtofastq bedtools bam sam snp written 4.4 years ago by signauncreal0 • updated 18 days ago by Biostar ♦♦ 20
0
votes
2
answers
1.4k
views
2
answers
Answer: A: wgsim outputs different files
... that is true, but the files give out the same information, just a marginal portion (roughly 5%) of the information given in the file originating from svSimContig is missing in the file given from svSimWG. That is not expected given the information you just stated. Anyways, what im trying to emphasiz ...
written 4.6 years ago by signauncreal0
0
votes
2
answers
1.4k
views
2
answers
wgsim outputs different files
... Hey guys, im simulating SVs on the human genome using svsim. The output files im using with vgsim to simulate sequencing reads. I have observed something i cannot make sense of: depending on whether i use svsim in contig or whole genome mode, the result i get using wgsim on either files differs fr ...
sequencing written 4.6 years ago by signauncreal0 • updated 3.6 years ago by Biostar ♦♦ 20

Latest awards to signauncreal

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1359 users visited in the last hour