User: jinxinhao1988

gravatar for jinxinhao1988
Reputation:
50
Status:
New User
Location:
China/Beijing
Last seen:
2 weeks, 2 days ago
Joined:
2 years, 4 months ago
Email:
j************@163.com

I am a new hand in bioinformatics.My postgraduate work focuses on plant transcriptome. And now doing SV, SNP calling work in the disease.

Posts by jinxinhao1988

<prev • 31 results • page 1 of 4 • next >
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Answer: A: How to get SNP annotation with 3-letter amino acid abbreviation?
... update: Actually snpEff can feed back 3-letter Amino acid abbreviation. And the results are quite good. ...
written 16 days ago by jinxinhao198850
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How to use mutation rate to identify a homozygous or heterozygous mutation?
... Dear all, I have a question that we use software to call SNP, and get the mutation rate of each SNP, are there any standards to identify if it is a homozygous mutation? like setting a threshold of 40%-80% is heterozygous mutation, and beyond 80% or beneath 40% is homozygous mutation. If there is a ...
snp written 16 days ago by jinxinhao198850 • updated 16 days ago by Kevin Blighe21k
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Comment: C: How to get SNP annotation with 3-letter amino acid abbreviation?
... Hello,fin, Thank you for your script, It worked for my results. ...
written 4 weeks ago by jinxinhao198850
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Comment: C: How to get SNP annotation with 3-letter amino acid abbreviation?
... Thank you fin. I will try and feed you results. ...
written 4 weeks ago by jinxinhao198850
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How to get SNP annotation with 3-letter amino acid abbreviation?
... Dear all, Now we used ANNOVAR to annotate our SNP detected. But the result of ANNOVAR is the single-letter Amino acid abbreviation. It's like this: The results I want is like this: So does anyone knows that which annotation software can feed back this 3-letter amino acid abbreviation? Thanks in ...
annotation snp written 4 weeks ago by jinxinhao198850
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How to evaluate "control" genes in target sequencing data?
... Hi everyone, I've got a batch of target sequencing data and I want to identify the CNV or LOH in Chr1 and Chr19, besides the chr1 and chr19 region, I also have some target regions which are used to call SNPs. Since my samples are all tumor samples, there is no paired normal sample, so I want to fin ...
cnv tumor written 3 months ago by jinxinhao198850
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Comment: C: KOBAS web server
... Yes, I noticed this problem either. It seems that this has last for several days. Maybe you can write an email to the maintainer of the tool to inquiry the reason. ...
written 3 months ago by jinxinhao198850
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Copynumber calculation problem
... Hi all, I've got a question about copynumber calculation. I used Varscan2 and DNAcopy to call CNV. and got the results as follows: ![This is the outcome of chr20.][1] As we can see that the mean of three logratio valuesis 1.2212. Since the logratio is LOG[(tumor copynumber)/(normal copynumber),2 ...
varscan2 cnv written 4 months ago by jinxinhao198850 • updated 4 months ago by Kevin Blighe21k
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Comment: C: bwa mem mapping
... Do you check the nohup.out file and stderr file to see if there is any error message? ...
written 4 months ago by jinxinhao198850
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Comment: C: bwa mem mapping
... Actually you need to paste the command line you used, otherwise we can not analyze the problems. Thanks. ...
written 4 months ago by jinxinhao198850

Latest awards to jinxinhao1988

Scholar 16 days ago, created an answer that has been accepted. For A: How to get SNP annotation with 3-letter amino acid abbreviation?
Popular Question 22 months ago, created a question with more than 1,000 views. For How to identify bowtie2 unique mapping using sam flag value?
Autobiographer 22 months ago, has more than 80 characters in the information field of the user's profile.

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