User: lal

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lal0
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Posts by lal

<prev • 4 results • page 1 of 1 • next >
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Comment: C: is it code is python + bash .....and what is this AssignGenes.py ?
... **germline reconstruction** Hi Why ISOTYPE is not found in file? There is an alternative way to fix this issue? ```{r} library(alakazam) # Upate names in alakazam’s default colors (IG_COLORS) names(IG_COLORS) <- c( "IGHA", "IGHD", "IGHE", "IGHG", "IGHM","IGHK", "IGHL") ...
written 4 days ago by lal0
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Comment: C: is it code is python + bash .....and what is this AssignGenes.py ?
... I am confused about whether I have to open a python terminal to run the following scripts or I can do it in a bash (LINUX) environment? AssignGenes.py igblast -s filtered_contig.fasta -b ~/share/igblast \ --organism human --loci ig --format blast ...
written 12 days ago by lal0
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Comment: C: is it code is python + bash .....and what is this AssignGenes.py ?
... Thank you so much for your reply. But, now I am confused about the entire script. 1. What is this igblast _is it a pipeline? (Do I have to install it separately prior to the analysis !) **AssignGenes.py *igblast* -s filtered_contig.fasta -b ~/share/igblast \ --organism human --loci ig --forma ...
written 13 days ago by lal0
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is it code is python + bash .....and what is this AssignGenes.py ?
... Hello all. this link (https://changeo.readthedocs.io/en/stable/examples/10x.html ) is from changeo(which used as analyse the B cell and T cell repositories) My question is 1. what is this assignGenes.py--- I know its python file. Does have any clue what is inside the file ? **AssignGenes.p ...
assembly next-gen rna-seq sequencing written 14 days ago by lal0

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