User: ahmad.iut

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ahmad.iut70
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Posts by ahmad.iut

<prev • 18 results • page 1 of 2 • next >
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TOPGO- how to do GO enrichment using a custom go database?
... Hello Biostars, I want to do GO-enrichment analysis for a non-model organism. I have these tab-delimited files: reference (two columns): genename GOs gene1 GO:1, GO:2,GO:3 gene2 GO:2,GO:4,GO:6 gene3 GO10 DEGS1: gene1 gene2 gene3 DEGS2: gene5 gene6 gene7 How could I enriched GOs in DEGS ...
R gene ontology topgo go enrichment rna-seq written 9 months ago by ahmad.iut70 • updated 9 months ago by ahmad mousavi450
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What percentage of human genes are regulatory genes?
... What percentage of human genes are regulatory genes? what about all organisms in general? ...
gene genetics molecular biology human written 2.7 years ago by ahmad.iut70 • updated 2.7 years ago by natasha.sernova3.5k
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Comment: C: Any website to find out sequenced genomes and under sequencing genomes
... Thank you piet, That's what I need. ...
written 3.2 years ago by ahmad.iut70
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Comment: C: Heatmap of diferent conditions
... **pheatmap** package is one of the best. it will draw heatmap the same as the heatmap in the paper. ...
written 3.2 years ago by ahmad.iut70
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Any website to find out sequenced genomes and under sequencing genomes
... Hello all, Is there any website to show under sequencing genome projects? Specially, ongoing plant genome projects. I googled it but could not find anything informative. Thanks in advance ...
genome sequencing written 3.2 years ago by ahmad.iut70 • updated 6 days ago by Biostar ♦♦ 20
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Comment: C: how to find Q20, Q30, Q40 ,... of a fastq file?
... Thanks again Antonio, You are right, and I agree that average quality score is not good enough. I have done fastQC for my data and have quality for each position.Everything is ok with that. I wanted an overall evaluation of my data out of curiosity. Finally, I found some tools for this purpose. "Fa ...
written 3.2 years ago by ahmad.iut70
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Comment: C: how to find Q20, Q30, Q40 ,... of a fastq file?
... Hi Picasa, No I didn't try it, is there any script for that? ...
written 3.2 years ago by ahmad.iut70
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Comment: C: how to find Q20, Q30, Q40 ,... of a fastq file?
... I just want to evaluate all reads with one score. I sequenced by Illumina hiseq 2000. I am interested to know what percent of my data has more score than Q20, what percent more than q30 and so on. I have done fastqc but I am curios to find out q20,... of my data. Is there any tool or script? ...
written 3.2 years ago by ahmad.iut70
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Comment: C: how to find Q20, Q30, Q40 ,... of a fastq file?
... Thanks Antonio, but I want to have the %>q30 for all reads and positions. The sequencing company sent me a report that say Q20=98% I want to calculate it again by myself. also calculate q30 and q40. By the way, I want to make my Q20 of my data near to 100. any idea? ...
written 3.2 years ago by ahmad.iut70
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how to find Q20, Q30, Q40 ,... of a fastq file?
... Hello there I want to determine %>q20 , Q30, Q40 of some fastq files produced by illumina hiseq 2000. Do you have any idea? Thanks ...
rna-seq sequencing written 3.2 years ago by ahmad.iut70 • updated 3.2 years ago by Antonio R. Franco4.1k

Latest awards to ahmad.iut

Popular Question 19 months ago, created a question with more than 1,000 views. For A script for extracting information related to a list of gene names from a file
Popular Question 19 months ago, created a question with more than 1,000 views. For how to find Q20, Q30, Q40 ,... of a fastq file?
Popular Question 2.6 years ago, created a question with more than 1,000 views. For how to find Q20, Q30, Q40 ,... of a fastq file?
Supporter 3.2 years ago, voted at least 25 times.

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