User: archie.w.lee

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archie.w.lee40
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Posts by archie.w.lee

<prev • 9 results • page 1 of 1 • next >
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Comment: C: What is the drawback of mapping reads to a very fragmented genome reference?
... Thank you so much for your reply ...
written 10 weeks ago by archie.w.lee40
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Comment: C: What is the drawback of mapping reads to a very fragmented genome reference?
... Thank you so much for your reply ...
written 10 weeks ago by archie.w.lee40
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What is the drawback of mapping reads to a very fragmented genome reference?
... Dear All, What is the drawback of mapping reads to a very fragmented genome reference?The genome is about 200M, and about ~10,200 contigs. What is acceptable contigs number? Could you please give me some pointer? Thanks. AL ...
alignment written 10 weeks ago by archie.w.lee40
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Comment: C: How should I count the percentage of messenger RNA and ribosomal RNA in the samp
... Thank you, I will try. ...
written 4 months ago by archie.w.lee40
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Comment: C: How should I count the percentage of messenger RNA and ribosomal RNA in the samp
... Got it, thanks for the remind. ...
written 4 months ago by archie.w.lee40
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How should I count the percentage of messenger RNA and ribosomal RNA in the samples
... Dear All We have some E coli. total RNA-seq data and my PI would like to count the percentage of messenger RNA and ribosomal RNA in the data. My idea is mapping the data to the transcriptome and rRNA data separately and then count the reads#. Do you think this is a doable plan? But, I have no idea ...
rna-seq written 4 months ago by archie.w.lee40 • updated 4 months ago by jinxinhao198840
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Comment: C: Rna-Seq: Novel Transcripts Found. What Next?
... This is very helpful. I have another newbie question, could you please give me some pointers about what software/pipeline should I use for detection of the novel transcript? Thank you so much. ...
written 8 months ago by archie.w.lee40
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What is the most popular and best tools/pipeline for small RNA seq analysis?
... Dear All I have to analyze a small RNA-seq data. This is my first time working with small RNA. I search threads here but the most recent is 2013.There are several new tools/publictions since 2015 but they doesn't have much citations. I have no hint how to make choose. What is the most popular and b ...
small rna seq pipeline written 22 months ago by archie.w.lee40 • updated 10 days ago by accfree0
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Can not pass QC when doing imputation with Michigan Imputation Serve and Haplotype Reference Consortium panels
... Hello All. I have 88 samples in 23andme format. The population is EUR. And I would like to do imputation with Michigan Imputation Serve and Haplotype Reference Consortium panels. The first thing I did is converting the 23andme format to VCF format by bcftools with following commend. The reference ...
hrc 23andme imputation genotype written 2.3 years ago by archie.w.lee40 • updated 14 months ago by shengchao.li10

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