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147
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Answer: Answer: Mate-pair sequencing
6 days ago by benformatics 3.4k
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1.8k
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Comment: Comment: GSEA from broad institute normalization method
13 days ago by benformatics 3.4k
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0
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247
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Comment: Comment: change color and scale in SpatialFeaturePlot
16 days ago by benformatics 3.4k
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1
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265
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Comment: Comment: Some questions on RAD paired-end sequencing
17 days ago by benformatics 3.4k
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1
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265
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Answer: Answer: Some questions on RAD paired-end sequencing
17 days ago by benformatics 3.4k
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461
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Comment: Comment: How to remove un-paired reads from BAM after filtering?
24 days ago by benformatics 3.4k
3
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5
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461
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How to remove un-paired reads from BAM after filtering?
unmapped picard samtools
24 days ago by benformatics 3.4k
2
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1
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461
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Answer: Answer: How to remove un-paired reads from BAM after filtering?
24 days ago by benformatics 3.4k
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1
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461
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Comment: Comment: How to remove un-paired reads from BAM after filtering?
24 days ago by benformatics 3.4k
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0
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368
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Comment: Comment: What exactly are unmappable regions?
25 days ago by benformatics 3.4k
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1
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447
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Comment: Comment: Why did my data get worse after trimming with trimmomatic?
25 days ago by benformatics 3.4k
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1
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412
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Comment: Comment: Human transcriptome STAR multi-mapped problem
7 weeks ago by benformatics 3.4k
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2
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990
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Comment: Comment: How to find rna strand direction before alignment?
8 weeks ago by benformatics 3.4k
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2
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990
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Comment: Comment: How to find rna strand direction before alignment?
8 weeks ago by benformatics 3.4k
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0
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360
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Answer: Answer: Does anyone have experience using findtail?
8 weeks ago by benformatics 3.4k
1
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0
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990
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Answer: Answer: How to find rna strand direction before alignment?
8 weeks ago by benformatics 3.4k
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146
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Answer: Answer: comparison of conditions scRNA-seq
8 weeks ago by benformatics 3.4k
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1
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4.5k
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Comment: Comment: CPM or TPM in GSEA analysis
9 weeks ago by benformatics 3.4k
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1
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4.5k
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Comment: Comment: CPM or TPM in GSEA analysis
9 weeks ago by benformatics 3.4k
1
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1
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461
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Answer: Answer: Treating "patient" as a batch effect
10 weeks ago by benformatics 3.4k
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1
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376
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Comment: Comment: Proportion of mitochondrial reads atac seq
10 weeks ago by benformatics 3.4k
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2
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376
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Answer: Answer: Proportion of mitochondrial reads atac seq
10 weeks ago by benformatics 3.4k
1
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0
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246
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Answer: Answer: PolyA Tail Detection in RNA-seq data
10 weeks ago by benformatics 3.4k
1
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1
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222
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Answer: Answer: Extract list of mapped UMIs in cell ranger output
11 weeks ago by benformatics 3.4k
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0
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220
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Answer: Answer: How to get the canonical transcript from gene ensemble ID
11 weeks ago by benformatics 3.4k
2
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1
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206
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Answer: Answer: Estimating mRNA 5' degradation from RNA-seq illumina strand-specific reads
11 weeks ago by benformatics 3.4k
3
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0
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1.2k
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Answer: Answer: Does a PhD or work experience set you up better to do bioinformatics work in ind
12 weeks ago by benformatics 3.4k
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1
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315
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Answer: Answer: How to convert trinotate results into GFF3
12 weeks ago by benformatics 3.4k
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1
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385
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Answer: Answer: How to tell if GEO SRA is paired or single?
12 weeks ago by benformatics 3.4k
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504
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Comment: Comment: How much RAM for scRNAseq 200K cells?
3 months ago by benformatics 3.4k
0
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0
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513
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Comment: Comment: scRNA-Seq datasets with labels
3 months ago by benformatics 3.4k
1
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0
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527
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Answer: Answer: Which Bioinformatics Master's degree is better?
3 months ago by benformatics 3.4k
0
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0
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252
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Answer: Answer: Protein sequence from a gene fusion?
3 months ago by benformatics 3.4k
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1
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291
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Comment: Comment: Does chemistry have significant effects on my single nucleus dataset?
3 months ago by benformatics 3.4k
1
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0
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369
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Comment: Comment: How can I get counts from transgenic expression in RNA-seq data?
3 months ago by benformatics 3.4k
3
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3
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369
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Answer: Answer: How can I get counts from transgenic expression in RNA-seq data?
3 months ago by benformatics 3.4k
0
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0
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318
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Comment: Comment: Why an extremely large number of reads are mapped to several chromosomes in RNA-
3 months ago by benformatics 3.4k
1
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1
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513
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Comment: Comment: scRNA-Seq datasets with labels
3 months ago by benformatics 3.4k
1
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0
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882
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Comment: Comment: Quantseq 3' seq alignment with kallisto
3 months ago by benformatics 3.4k
0
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1
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882
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Answer: Answer: Quantseq 3' seq alignment with kallisto
3 months ago by benformatics 3.4k
0
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0
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306
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Comment: Comment: convert a list of plotly plots to an HTML output
3 months ago by benformatics 3.4k
0
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1
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306
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Answer: Answer: convert a list of plotly plots to an HTML output
3 months ago by benformatics 3.4k
0
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1
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1.0k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
3 months ago by benformatics 3.4k
0
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1
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438
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Comment: Comment: Public availability of de-identified patient data
3 months ago by benformatics 3.4k
1
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0
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395
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Answer: Answer: How to select rows which has NA in any column in the dataframe in R?
4 months ago by benformatics 3.4k
0
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0
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165
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Comment: Comment: Error in mitch reports in R
4 months ago by benformatics 3.4k
0
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0
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330
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Answer: Answer: To order list of genes
4 months ago by benformatics 3.4k
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0
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723
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Comment: Comment: Unaligned Reads From Bowtie2
4 months ago by benformatics 3.4k
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1
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1.0k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
4 months ago by benformatics 3.4k
1
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1
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500
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Answer: Answer: HELP- analysis RNa-seq from GEO
4 months ago by benformatics 3.4k
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