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Comment: Comment: heterozygous variant on the X chromosome
2 days ago by benformatics 4.1k
3
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233
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Answer: Answer: heterozygous variant on the X chromosome
2 days ago by benformatics 4.1k
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311
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How to determine intra-run and inter-run repeatability in statistically sound manner?
Validation
updated 9 days ago by 4.7k • written 9 days ago by 4.1k
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724
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Comment: Comment: HTSeq-count vs. FeatureCounts: Significant Difference in Results
6 weeks ago by benformatics 4.1k
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1
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793
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Answer: Answer: What is a genomic range that would almost always get decent WGS coverage but is
6 weeks ago by benformatics 4.1k
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0
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1.1k
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Comment: Comment: RNA-Seq mutation calling without germline data
6 weeks ago by benformatics 4.1k
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1
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724
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Answer: Answer: HTSeq-count vs. FeatureCounts: Significant Difference in Results
6 weeks ago by benformatics 4.1k
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0
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717
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Comment: Comment: How the field has changed in the last 5 years, and 25 years (up to 2024)
7 weeks ago by benformatics 4.1k
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1
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679
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Comment: Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
10 weeks ago by benformatics 4.1k
2
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1
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1.1k
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Answer: Answer: RNA-Seq mutation calling without germline data
11 weeks ago by benformatics 4.1k
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1
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1.7k
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Comment: Comment: New Illumina error mode, new BBTools release (39.09) to deal with it
12 weeks ago by benformatics 4.1k
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1
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3.4k
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Comment: Comment: NGS forensics: how to know if data is fabricated
7 months ago by benformatics 4.1k
2
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0
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3.4k
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Comment: Comment: NGS forensics: how to know if data is fabricated
7 months ago by benformatics 4.1k
2
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0
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15k
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Answer: Answer: How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
7 months ago by benformatics 4.1k
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0
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385
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Answer: Answer: Exon often targeted by mobile element insertions?
10 months ago by benformatics 4.1k
0
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0
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454
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GATK SelectVariants --remove-unused-alternates dropping real INDELs?
GATK
13 months ago by benformatics 4.1k
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0
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699
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Comment: Comment: STAR GeneCounts for most genes are 0
13 months ago by benformatics 4.1k
2
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1
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1.3k
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Answer: Answer: Paired-end RNA seq (NextSeq2000): 1-3% if R2 reads are only contain G bases
13 months ago by benformatics 4.1k
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0
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693
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Comment: Comment: unbiased clustering of these top 50 genes in seurat
13 months ago by benformatics 4.1k
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0
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709
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Answer: Answer: How to plot two categorical variables in ggridges?
13 months ago by benformatics 4.1k
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0
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709
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Comment: Comment: How to plot two categoric variables in ggridges?
13 months ago by benformatics 4.1k
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1
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1.8k
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Answer: Answer: Map genome positions onto protein coordinates?
13 months ago by benformatics 4.1k
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0
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846
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Answer: Answer: Get discordant read pairs from bam
14 months ago by benformatics 4.1k
1
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1
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4.3k
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Comment: Comment: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
14 months ago by benformatics 4.1k
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1
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2.0k
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Answer: Answer: Discussion: Uploading terrabytes of data to NCBI SRA
15 months ago by benformatics 4.1k
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0
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1.3k
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Answer: Answer: insert size in bam file do not make sense
17 months ago by benformatics 4.1k
5
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0
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1.8k
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Answer: Answer: How to import a gtf file in R so that it appears in tabular format as if it were
17 months ago by benformatics 4.1k
1
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1
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623
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Comment: Comment: Assigning cell types to cells based on expression of cell surface markers
17 months ago by benformatics 4.1k
0
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0
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1.2k
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Answer: Answer: How to label clusters from a UMAP
17 months ago by benformatics 4.1k
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0
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1.0k
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Comment: Comment: Identify Alternative Splicing Event using exon and junction count table
17 months ago by benformatics 4.1k
0
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1
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3.0k
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Answer: Answer: Remove short sequences with length < 50% from a multi-fasta file
17 months ago by benformatics 4.1k
1
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0
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2.0k
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Answer: Answer: I want to rename sequence headers
updated 17 months ago by 44k • written 17 months ago by 4.1k
0
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1
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1.4k
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Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
17 months ago by benformatics 4.1k
1
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1
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1.4k
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Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
17 months ago by benformatics 4.1k
0
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0
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2.4k
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Comment: Comment: monocle single cell differential expression: error message for HSMM <- estimateD
17 months ago by benformatics 4.1k
0
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1
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1.3k
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Comment: Comment: gene id
17 months ago by benformatics 4.1k
0
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1
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1.3k
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Comment: Comment: gene id
17 months ago by benformatics 4.1k
0
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0
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696
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Answer: Answer: 3' Single Cell RNA Seq Reads mapping to promoter region of gene
17 months ago by benformatics 4.1k
0
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0
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1.2k
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Comment: Comment: Analize RNA-seq data using Hisat2
18 months ago by benformatics 4.1k
1
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0
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1.0k
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Comment: Comment: Filtering mitochondrial reads from ATAC-Seq aligned reads- what to do with reads
18 months ago by benformatics 4.1k
1
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0
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871
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Comment: Comment: Is the gene-specific PCR efficiency a serious concern for intrasample comparison
19 months ago by benformatics 4.1k
0
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1
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1.3k
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Comment: Comment: error in Genome Mepping by BWA tools in Linux
19 months ago by benformatics 4.1k
2
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0
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848
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Answer: Answer: Fastqs different lanes
19 months ago by benformatics 4.1k
0
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0
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876
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Comment: Comment: Chance that DNA with 3N nucleotide encodes 2 protein with size of N amino-acids
19 months ago by benformatics 4.1k
0
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0
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1.5k
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Comment: Comment: How do I project known tSNE coordinates onto SeuratObject
19 months ago by benformatics 4.1k
1
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1
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1.5k
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Answer: Answer: How do I project known tSNE coordinates onto SeuratObject
19 months ago by benformatics 4.1k
0
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1
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876
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Comment: Comment: Chance that DNA with 3N nucleotide encodes 2 protein with size of N amino-acids
19 months ago by benformatics 4.1k
0
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1
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5.5k
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Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
20 months ago by benformatics 4.1k
1
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1
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5.5k
views
Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
20 months ago by benformatics 4.1k
0
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0
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1.2k
views
Comment: Comment: Remove string from Seurat object metadata
20 months ago by benformatics 4.1k
487 results • Page 1 of 10
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