Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
Showing : all
1
vote
0
replies
210
views
Answer: Answer: Exon often targeted by mobile element insertions?
9 weeks ago by benformatics 3.9k
0
votes
0
replies
282
views
GATK SelectVariants --remove-unused-alternates dropping real INDELs?
GATK
5 months ago by benformatics 3.9k
0
votes
0
replies
474
views
Comment: Comment: STAR GeneCounts for most genes are 0
5 months ago by benformatics 3.9k
2
votes
1
reply
784
views
Answer: Answer: Paired-end RNA seq (NextSeq2000): 1-3% if R2 reads are only contain G bases
5 months ago by benformatics 3.9k
0
votes
0
replies
496
views
Comment: Comment: unbiased clustering of these top 50 genes in seurat
5 months ago by benformatics 3.9k
0
votes
0
replies
439
views
Answer: Answer: How to plot two categorical variables in ggridges?
5 months ago by benformatics 3.9k
1
vote
0
replies
439
views
Comment: Comment: How to plot two categoric variables in ggridges?
5 months ago by benformatics 3.9k
1
vote
1
reply
1.1k
views
Answer: Answer: Map genome positions onto protein coordinates?
5 months ago by benformatics 3.9k
1
vote
0
replies
515
views
Answer: Answer: Get discordant read pairs from bam
6 months ago by benformatics 3.9k
1
vote
1
reply
3.5k
views
Comment: Comment: Why should ATAC-seq mapped reads be shifted +4 and -5 for +strand and -strand, r
6 months ago by benformatics 3.9k
1
vote
1
reply
1.3k
views
Answer: Answer: Discussion: Uploading terrabytes of data to NCBI SRA
8 months ago by benformatics 3.9k
1
vote
0
replies
677
views
Answer: Answer: insert size in bam file do not make sense
9 months ago by benformatics 3.9k
5
votes
0
replies
1.1k
views
Answer: Answer: How to import a gtf file in R so that it appears in tabular format as if it were
9 months ago by benformatics 3.9k
1
vote
1
reply
469
views
Comment: Comment: Assigning cell types to cells based on expression of cell surface markers
9 months ago by benformatics 3.9k
0
votes
0
replies
827
views
Answer: Answer: How to label clusters from a UMAP
9 months ago by benformatics 3.9k
1
vote
0
replies
698
views
Comment: Comment: Identify Alternative Splicing Event using exon and junction count table
9 months ago by benformatics 3.9k
0
votes
1
reply
2.2k
views
Answer: Answer: Remove short sequences with length < 50% from a multi-fasta file
9 months ago by benformatics 3.9k
1
vote
0
replies
1.3k
views
Answer: Answer: I want to rename sequence headers
updated 9 months ago by 43k • written 9 months ago by 3.9k
0
votes
1
reply
980
views
Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
9 months ago by benformatics 3.9k
1
vote
1
reply
980
views
Comment: Comment: Contig labels in BAM off by 1, how do I fix it?
9 months ago by benformatics 3.9k
0
votes
0
replies
1.8k
views
Comment: Comment: monocle single cell differential expression: error message for HSMM <- estimateD
9 months ago by benformatics 3.9k
0
votes
1
reply
968
views
Comment: Comment: gene id
9 months ago by benformatics 3.9k
0
votes
1
reply
968
views
Comment: Comment: gene id
9 months ago by benformatics 3.9k
0
votes
0
replies
534
views
Answer: Answer: 3' Single Cell RNA Seq Reads mapping to promoter region of gene
9 months ago by benformatics 3.9k
0
votes
0
replies
923
views
Comment: Comment: Analize RNA-seq data using Hisat2
10 months ago by benformatics 3.9k
1
vote
0
replies
711
views
Comment: Comment: Filtering mitochondrial reads from ATAC-Seq aligned reads- what to do with reads
10 months ago by benformatics 3.9k
1
vote
0
replies
685
views
Comment: Comment: Is the gene-specific PCR efficiency a serious concern for intrasample comparison
11 months ago by benformatics 3.9k
0
votes
1
reply
1.0k
views
Comment: Comment: error in Genome Mepping by BWA tools in Linux
11 months ago by benformatics 3.9k
2
votes
0
replies
656
views
Answer: Answer: Fastqs different lanes
11 months ago by benformatics 3.9k
0
votes
0
replies
671
views
Comment: Comment: Chance that DNA with 3N nucleotide encodes 2 protein with size of N amino-acids
12 months ago by benformatics 3.9k
0
votes
0
replies
1.0k
views
Comment: Comment: How do I project known tSNE coordinates onto SeuratObject
12 months ago by benformatics 3.9k
1
vote
1
reply
1.0k
views
Answer: Answer: How do I project known tSNE coordinates onto SeuratObject
12 months ago by benformatics 3.9k
0
votes
1
reply
671
views
Comment: Comment: Chance that DNA with 3N nucleotide encodes 2 protein with size of N amino-acids
12 months ago by benformatics 3.9k
0
votes
1
reply
4.2k
views
Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by benformatics 3.9k
1
vote
1
reply
4.2k
views
Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by benformatics 3.9k
0
votes
0
replies
938
views
Comment: Comment: Remove string from Seurat object metadata
12 months ago by benformatics 3.9k
0
votes
1
reply
938
views
Answer: Answer: Remove string from Seurat object metadata
12 months ago by benformatics 3.9k
1
vote
1
reply
4.2k
views
Comment: Comment: I want to correct the erroneous barcode file, and the Python code that I've writ
12 months ago by benformatics 3.9k
0
votes
1
reply
4.4k
views
Comment: Comment: What are the advantages of using the T2T as a reference vs GRCh38 today?
12 months ago by benformatics 3.9k
0
votes
0
replies
540
views
Comment: Comment: Merged BAM has more reads than sum of parts
12 months ago by benformatics 3.9k
0
votes
1
reply
1.5k
views
Comment: Comment: Can you swap reference genome releases ?
12 months ago by benformatics 3.9k
0
votes
0
replies
613
views
Comment: Comment: Non-zero expression counts from deleted genes
12 months ago by benformatics 3.9k
0
votes
0
replies
726
views
Comment: Comment: R script error R aborted or encountered a fatal error
12 months ago by benformatics 3.9k
0
votes
1
reply
613
views
Comment: Comment: Non-zero expression counts from deleted genes
12 months ago by benformatics 3.9k
0
votes
0
replies
729
views
Answer: Answer: divide coordinates into equal number of bins
12 months ago by benformatics 3.9k
0
votes
0
replies
801
views
Answer: Answer: How to get fraction of unspliced reads for specific gene from scRNAseq Cell Rang
13 months ago by benformatics 3.9k
1
vote
0
replies
1.2k
views
Answer: Answer: Recommendation for (Alternative) Splicing analysis packages for bulk RNA-seq da
13 months ago by benformatics 3.9k
3
votes
0
replies
689
views
Comment: Comment: advice on course selection for a bioinformatics career.
13 months ago by benformatics 3.9k
0
votes
0
replies
612
views
Comment: Comment: Processing fastqs generated by inDrop protocol
13 months ago by benformatics 3.9k
1
vote
0
replies
1.1k
views
Comment: Comment: samtools idxstats not removing ChrM
13 months ago by benformatics 3.9k
473 results • Page 1 of 10
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6