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Comment:
Comment: Problem in converting SAM to BAM file by DROP SEQ
12 months ago by
benformatics
3.9k
1
vote
0
replies
1.1k
views
Comment:
Comment: samtools idxstats not removing ChrM
12 months ago by
benformatics
3.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: How does 10x Genomics 3' single cell data have reads aligning to exons that aren
12 months ago by
benformatics
3.9k
0
votes
1
reply
724
views
Comment:
Comment: CABSDock:fortran 2018 deleted feature
13 months ago by
benformatics
3.9k
1
vote
0
replies
518
views
Answer:
Answer: RNA seq analysis differential expression analysis
13 months ago by
benformatics
3.9k
1
vote
1
reply
475
views
Comment:
Comment: Bar plots at genera level with absolute percentage difference between two groups
13 months ago by
benformatics
3.9k
0
votes
1
reply
3.8k
views
Comment:
Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
13 months ago by
benformatics
3.9k
0
votes
1
reply
3.8k
views
Comment:
Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
13 months ago by
benformatics
3.9k
0
votes
1
reply
3.8k
views
Comment:
Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
13 months ago by
benformatics
3.9k
0
votes
1
reply
3.8k
views
Answer:
Answer: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
13 months ago by
benformatics
3.9k
0
votes
0
replies
647
views
Comment:
Comment: RNAseq matrix containing zero values
13 months ago by
benformatics
3.9k
0
votes
0
replies
580
views
Answer:
Answer: Mate-pair sequencing
14 months ago by
benformatics
3.9k
0
votes
0
replies
1.7k
views
Comment:
Comment: change color and scale in SpatialFeaturePlot
14 months ago by
benformatics
3.9k
0
votes
1
reply
903
views
Comment:
Comment: Some questions on RAD paired-end sequencing
14 months ago by
benformatics
3.9k
0
votes
1
reply
903
views
Answer:
Answer: Some questions on RAD paired-end sequencing
14 months ago by
benformatics
3.9k
0
votes
0
replies
1.4k
views
Comment:
Comment: How to remove un-paired reads from BAM after filtering?
14 months ago by
benformatics
3.9k
3
votes
5
replies
1.4k
views
How to remove un-paired reads from BAM after filtering?
picard
samtools
updated 9 months ago by
Ram
43k • written 14 months ago by
benformatics
3.9k
2
votes
1
reply
1.4k
views
Answer:
Answer: How to remove un-paired reads from BAM after filtering?
14 months ago by
benformatics
3.9k
0
votes
1
reply
1.4k
views
Comment:
Comment: How to remove un-paired reads from BAM after filtering?
14 months ago by
benformatics
3.9k
1
vote
0
replies
838
views
Comment:
Comment: What exactly are unmappable regions?
14 months ago by
benformatics
3.9k
3
votes
1
reply
1.3k
views
Comment:
Comment: Why did my data get worse after trimming with trimmomatic?
14 months ago by
benformatics
3.9k
0
votes
1
reply
889
views
Comment:
Comment: Human transcriptome STAR multi-mapped problem
15 months ago by
benformatics
3.9k
1
vote
2
replies
2.3k
views
Comment:
Comment: How to find rna strand direction before alignment?
15 months ago by
benformatics
3.9k
0
votes
2
replies
2.3k
views
Comment:
Comment: How to find rna strand direction before alignment?
15 months ago by
benformatics
3.9k
1
vote
0
replies
777
views
Answer:
Answer: Does anyone have experience using findtail?
15 months ago by
benformatics
3.9k
1
vote
0
replies
2.3k
views
Answer:
Answer: How to find rna strand direction before alignment?
15 months ago by
benformatics
3.9k
1
vote
0
replies
364
views
Answer:
Answer: comparison of conditions scRNA-seq
15 months ago by
benformatics
3.9k
0
votes
1
reply
7.8k
views
Comment:
Comment: CPM or TPM in GSEA analysis
16 months ago by
benformatics
3.9k
1
vote
1
reply
930
views
Answer:
Answer: Treating "patient" as a batch effect
16 months ago by
benformatics
3.9k
0
votes
1
reply
899
views
Comment:
Comment: Proportion of mitochondrial reads atac seq
16 months ago by
benformatics
3.9k
1
vote
2
replies
899
views
Answer:
Answer: Proportion of mitochondrial reads atac seq
16 months ago by
benformatics
3.9k
1
vote
0
replies
557
views
Answer:
Answer: PolyA Tail Detection in RNA-seq data
16 months ago by
benformatics
3.9k
1
vote
1
reply
602
views
Answer:
Answer: Extract list of mapped UMIs in cell ranger output
16 months ago by
benformatics
3.9k
1
vote
0
replies
1.1k
views
Answer:
Answer: How to get the canonical transcript from gene ensemble ID
16 months ago by
benformatics
3.9k
2
votes
1
reply
515
views
Answer:
Answer: Estimating mRNA 5' degradation from RNA-seq illumina strand-specific reads
16 months ago by
benformatics
3.9k
4
votes
0
replies
3.8k
views
Answer:
Answer: Does a PhD or work experience set you up better to do bioinformatics work in ind
10 weeks ago by
benformatics
3.9k
0
votes
1
reply
733
views
Answer:
Answer: How to convert trinotate results into GFF3
16 months ago by
benformatics
3.9k
1
vote
1
reply
811
views
Answer:
Answer: How to tell if GEO SRA is paired or single?
16 months ago by
benformatics
3.9k
1
vote
0
replies
1.7k
views
Comment:
Comment: How much RAM for scRNAseq 200K cells?
16 months ago by
benformatics
3.9k
0
votes
0
replies
860
views
Comment:
Comment: scRNA-Seq datasets with labels
16 months ago by
benformatics
3.9k
1
vote
0
replies
1.3k
views
Answer:
Answer: Which Bioinformatics Master's degree is better?
17 months ago by
benformatics
3.9k
0
votes
0
replies
482
views
Answer:
Answer: Protein sequence from a gene fusion?
17 months ago by
benformatics
3.9k
0
votes
1
reply
528
views
Comment:
Comment: Does chemistry have significant effects on my single nucleus dataset?
17 months ago by
benformatics
3.9k
1
vote
0
replies
860
views
Comment:
Comment: How can I get counts from transgenic expression in RNA-seq data?
17 months ago by
benformatics
3.9k
3
votes
3
replies
860
views
Answer:
Answer: How can I get counts from transgenic expression in RNA-seq data?
17 months ago by
benformatics
3.9k
0
votes
0
replies
779
views
Comment:
Comment: Why an extremely large number of reads are mapped to several chromosomes in RNA-
17 months ago by
benformatics
3.9k
1
vote
1
reply
860
views
Comment:
Comment: scRNA-Seq datasets with labels
17 months ago by
benformatics
3.9k
1
vote
0
replies
1.6k
views
Comment:
Comment: Quantseq 3' seq alignment with kallisto
17 months ago by
benformatics
3.9k
0
votes
1
reply
1.6k
views
Answer:
Answer: Quantseq 3' seq alignment with kallisto
17 months ago by
benformatics
3.9k
0
votes
0
replies
1.1k
views
Comment:
Comment: convert a list of plotly plots to an HTML output
17 months ago by
benformatics
3.9k
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