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250
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Answer: Answer: How to get/make a .gf file? rmats2sashimi
4 months ago by benformatics 3.4k
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527
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Comment: Comment: Allele flip in GATK
4 months ago by benformatics 3.4k
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1
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723
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Comment: Comment: Unaligned Reads From Bowtie2
4 months ago by benformatics 3.4k
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1.6k
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Comment: Comment: star --readFilesIn error when using unmapped.out.mate1/2 files
4 months ago by benformatics 3.4k
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1.0k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
4 months ago by benformatics 3.4k
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252
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Answer: Answer: Need an original PacBio SMRT Sequel fastq file from 2020
4 months ago by benformatics 3.4k
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269
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Comment: Comment: Manually adding genes of interest to transcriptome for RNASeq DE?
4 months ago by benformatics 3.4k
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473
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Answer: Answer: Conceptual questions regarding computational genome/annotation versions and the
4 months ago by benformatics 3.4k
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289
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Answer: Answer: Low expression of key transcripts in scRNAseq dataset after deeper sequencing
4 months ago by benformatics 3.4k
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284
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Comment: Comment: How to analyse different sample number fastq files
4 months ago by benformatics 3.4k
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184
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Answer: Answer: Irreproducibility Discovery Rate for broad histone marks.
4 months ago by benformatics 3.4k
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472
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Comment: Comment: rMATS reads used is zero (0)
4 months ago by benformatics 3.4k
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1
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472
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Comment: Comment: rMATS reads used is zero (0)
4 months ago by benformatics 3.4k
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472
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Answer: Answer: rMATS reads used is zero (0)
4 months ago by benformatics 3.4k
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1
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1.0k
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Comment: Comment: Find ~1 Mb regions of genome that are shared by two or more WGS samples?
4 months ago by benformatics 3.4k
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0
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243
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Answer: Answer: How can I get polyA position and coverage from polyA(+)RNASeq data?
4 months ago by benformatics 3.4k
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212
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Answer: Answer: Calculate PSI in gtf files in python
4 months ago by benformatics 3.4k
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1
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534
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Comment: Comment: 5' and 3' UTRs in RNA regulation
4 months ago by benformatics 3.4k
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323
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Answer: Answer: Do LoF/GoF count toward transcript count?
4 months ago by benformatics 3.4k
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1
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327
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Answer: Answer: R programming
5 months ago by benformatics 3.4k
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460
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Comment: Comment: Identifying tumor vs normal cells in scRNAseq samples
5 months ago by benformatics 3.4k
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518
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Comment: Comment: When a gene "fails" (ie doesn't express optimally or at all), does another gene
5 months ago by benformatics 3.4k
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0
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721
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Comment: Comment: Leaky RNA
5 months ago by benformatics 3.4k
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1
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24k
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Comment: Comment: read depth using samtools
5 months ago by benformatics 3.4k
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1
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24k
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Comment: Comment: read depth using samtools
5 months ago by benformatics 3.4k
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254
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Comment: Comment: Statistical test to decide key clusters
5 months ago by benformatics 3.4k
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425
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Comment: Comment: Difference in sashimi plot between single-cell versus bulk RNA-seq data
6 months ago by benformatics 3.4k
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524
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Answer: Answer: How to delete all numbers after dot in a column in R?
6 months ago by benformatics 3.4k
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1
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2.3k
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Comment: Comment: Extract reads from BAM file with known variant
6 months ago by benformatics 3.4k
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1
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2.3k
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Comment: Comment: Extract reads from BAM file with known variant
6 months ago by benformatics 3.4k
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0
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2.3k
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Comment: Comment: Extract reads from BAM file with known variant
6 months ago by benformatics 3.4k
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1
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2.3k
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Comment: Comment: Extract reads from BAM file with known variant
6 months ago by benformatics 3.4k
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3
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2.3k
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Answer: Answer: Extract reads from BAM file with known variant
6 months ago by benformatics 3.4k
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1
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2.3k
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Comment: Comment: Extract reads from BAM file with known variant
6 months ago by benformatics 3.4k
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1
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2.3k
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Comment: Comment: Extract reads from BAM file with known variant
6 months ago by benformatics 3.4k
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1
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2.3k
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Comment: Comment: Extract reads from BAM file with known variant
6 months ago by benformatics 3.4k
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1
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363
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Comment: Comment: Identifying and quantifying transcript variants in RNA-seq data
6 months ago by benformatics 3.4k
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0
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353
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Comment: Comment: Spiking variants into BAM file
6 months ago by benformatics 3.4k
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3
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359
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resolving specific clusters from data (spectral clustering)
clustering
updated 7 months ago by ★ 22k • written 7 months ago by 3.4k
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359
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Comment: Comment: resolving specific clusters from data (spectral clustering)
7 months ago by benformatics 3.4k
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341
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Comment: Comment: 3 reads with the same ID in sam file
7 months ago by benformatics 3.4k
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0
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321
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Answer: Answer: GRanges strand identification
8 months ago by benformatics 3.4k
1
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0
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927
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Answer: Answer: What counts as a valid biological replicate in single cell RNAseq?
8 months ago by benformatics 3.4k
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1
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705
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Comment: Comment: Mitochondrial genes as Seurat markers in nuclear sequencing data
8 months ago by benformatics 3.4k
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0
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733
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Answer: Answer: Is it possible to calculate TPM using 10X Genomics public data?
8 months ago by benformatics 3.4k
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1.0k
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Comment: Comment: Read counts an order of magnitude higher on one chromosome
8 months ago by benformatics 3.4k
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1
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1.0k
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Answer: Answer: Read counts an order of magnitude higher on one chromosome
8 months ago by benformatics 3.4k
1
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1
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1.0k
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Comment: Comment: Read counts an order of magnitude higher on one chromosome
8 months ago by benformatics 3.4k
1
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9.4k
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Comment: Comment: Can Illumina bcl2fastq use only one index for demultiplexing dual index sequenci
8 months ago by benformatics 3.4k
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1
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9.4k
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Comment: Comment: Can Illumina bcl2fastq use only one index for demultiplexing dual index sequenci
8 months ago by benformatics 3.4k
414 results • Page 2 of 9
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