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Comment: Comment: Problem in converting SAM to BAM file by DROP SEQ
13 months ago by benformatics 3.9k
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1.1k
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Comment: Comment: samtools idxstats not removing ChrM
13 months ago by benformatics 3.9k
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1.5k
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Comment: Comment: How does 10x Genomics 3' single cell data have reads aligning to exons that aren
13 months ago by benformatics 3.9k
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1
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746
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Comment: Comment: CABSDock:fortran 2018 deleted feature
13 months ago by benformatics 3.9k
1
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0
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534
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Answer: Answer: RNA seq analysis differential expression analysis
13 months ago by benformatics 3.9k
1
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1
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488
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Comment: Comment: Bar plots at genera level with absolute percentage difference between two groups
13 months ago by benformatics 3.9k
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1
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3.9k
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Comment: Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
13 months ago by benformatics 3.9k
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1
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3.9k
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Comment: Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
13 months ago by benformatics 3.9k
0
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1
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3.9k
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Comment: Comment: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
13 months ago by benformatics 3.9k
0
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1
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3.9k
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Answer: Answer: GRanges objects don't support [[, as.list(), lapply(), or unlist() at the moment
13 months ago by benformatics 3.9k
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0
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673
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Comment: Comment: RNAseq matrix containing zero values
14 months ago by benformatics 3.9k
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0
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594
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Answer: Answer: Mate-pair sequencing
14 months ago by benformatics 3.9k
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1.7k
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Comment: Comment: change color and scale in SpatialFeaturePlot
15 months ago by benformatics 3.9k
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1
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943
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Comment: Comment: Some questions on RAD paired-end sequencing
15 months ago by benformatics 3.9k
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1
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943
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Answer: Answer: Some questions on RAD paired-end sequencing
15 months ago by benformatics 3.9k
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0
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1.4k
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Comment: Comment: How to remove un-paired reads from BAM after filtering?
15 months ago by benformatics 3.9k
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5
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1.4k
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How to remove un-paired reads from BAM after filtering?
picard samtools
updated 10 months ago by 43k • written 15 months ago by 3.9k
2
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1.4k
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Answer: Answer: How to remove un-paired reads from BAM after filtering?
15 months ago by benformatics 3.9k
0
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1
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1.4k
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Comment: Comment: How to remove un-paired reads from BAM after filtering?
15 months ago by benformatics 3.9k
1
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0
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862
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Comment: Comment: What exactly are unmappable regions?
15 months ago by benformatics 3.9k
3
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1
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1.3k
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Comment: Comment: Why did my data get worse after trimming with trimmomatic?
15 months ago by benformatics 3.9k
0
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1
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916
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Comment: Comment: Human transcriptome STAR multi-mapped problem
16 months ago by benformatics 3.9k
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2
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2.4k
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Comment: Comment: How to find rna strand direction before alignment?
16 months ago by benformatics 3.9k
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2
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2.4k
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Comment: Comment: How to find rna strand direction before alignment?
16 months ago by benformatics 3.9k
1
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0
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806
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Answer: Answer: Does anyone have experience using findtail?
16 months ago by benformatics 3.9k
1
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0
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2.4k
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Answer: Answer: How to find rna strand direction before alignment?
16 months ago by benformatics 3.9k
1
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0
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374
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Answer: Answer: comparison of conditions scRNA-seq
16 months ago by benformatics 3.9k
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1
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8.0k
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Comment: Comment: CPM or TPM in GSEA analysis
16 months ago by benformatics 3.9k
1
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1
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964
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Answer: Answer: Treating "patient" as a batch effect
17 months ago by benformatics 3.9k
0
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1
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929
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Comment: Comment: Proportion of mitochondrial reads atac seq
17 months ago by benformatics 3.9k
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2
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929
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Answer: Answer: Proportion of mitochondrial reads atac seq
17 months ago by benformatics 3.9k
1
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0
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581
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Answer: Answer: PolyA Tail Detection in RNA-seq data
17 months ago by benformatics 3.9k
1
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1
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619
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Answer: Answer: Extract list of mapped UMIs in cell ranger output
17 months ago by benformatics 3.9k
2
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0
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1.1k
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Answer: Answer: How to get the canonical transcript from gene ensemble ID
17 months ago by benformatics 3.9k
2
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1
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531
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Answer: Answer: Estimating mRNA 5' degradation from RNA-seq illumina strand-specific reads
17 months ago by benformatics 3.9k
4
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0
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4.0k
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Answer: Answer: Does a PhD or work experience set you up better to do bioinformatics work in ind
3 months ago by benformatics 3.9k
0
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1
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747
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Answer: Answer: How to convert trinotate results into GFF3
17 months ago by benformatics 3.9k
1
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1
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844
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Answer: Answer: How to tell if GEO SRA is paired or single?
17 months ago by benformatics 3.9k
1
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0
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1.8k
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Comment: Comment: How much RAM for scRNAseq 200K cells?
17 months ago by benformatics 3.9k
0
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0
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877
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Comment: Comment: scRNA-Seq datasets with labels
17 months ago by benformatics 3.9k
1
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0
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1.3k
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Answer: Answer: Which Bioinformatics Master's degree is better?
17 months ago by benformatics 3.9k
0
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0
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494
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Answer: Answer: Protein sequence from a gene fusion?
17 months ago by benformatics 3.9k
0
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1
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540
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Comment: Comment: Does chemistry have significant effects on my single nucleus dataset?
17 months ago by benformatics 3.9k
1
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0
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884
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Comment: Comment: How can I get counts from transgenic expression in RNA-seq data?
18 months ago by benformatics 3.9k
3
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3
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884
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Answer: Answer: How can I get counts from transgenic expression in RNA-seq data?
18 months ago by benformatics 3.9k
0
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0
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803
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Comment: Comment: Why an extremely large number of reads are mapped to several chromosomes in RNA-
18 months ago by benformatics 3.9k
1
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1
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877
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Comment: Comment: scRNA-Seq datasets with labels
18 months ago by benformatics 3.9k
1
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0
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1.6k
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Comment: Comment: Quantseq 3' seq alignment with kallisto
18 months ago by benformatics 3.9k
0
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1
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1.6k
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Answer: Answer: Quantseq 3' seq alignment with kallisto
18 months ago by benformatics 3.9k
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0
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1.2k
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Comment: Comment: convert a list of plotly plots to an HTML output
18 months ago by benformatics 3.9k
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