User: Kritika

gravatar for Kritika
Kritika250
Reputation:
250
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Trusted
Location:
India
Last seen:
2 weeks, 3 days ago
Joined:
2 years, 4 months ago
Email:
k************@gmail.com

Posts by Kritika

<prev • 146 results • page 1 of 15 • next >
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How to Metanalysis of affymetrix chip (Clariom S and U133 a2 )
... Hi All I know this question is asked previously many time. But i am facing some different issues . I have CEL file of Clariom S and U133 a2 affymetirx chip. CDF file for Clariom S is not available. I want to do meta-analysis of this data. I tried VirtualArray but its not working in my system. Is ...
clarioms cross normalisation written 17 days ago by Kritika250
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Comment: C: How to call all the allele in samples
... yes i did google and i uderstood but fro freebayes gvcf option is not working. ...
written 8 weeks ago by Kritika250
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Comment: C: How to call all the allele in samples
... Is there any way that i keep my sample 1 as reference and call the snps from other samples. Sample 1 i have is bam file. ...
written 8 weeks ago by Kritika250
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Comment: C: How to call all the allele in samples
... Do you know any tool which can help? ...
written 8 weeks ago by Kritika250
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Comment: C: How to call all the allele in samples
... What is gvcf. If it will show all positions whatever the nucleotide is called including whether it's homozygous or heterozygous then gvcf will be use full for me ...
written 8 weeks ago by Kritika250
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Comment: A: How to call all the allele in samples
... My customer wants to know the difference in snps between samples. So if one position the allele is present in one sample which also matching to reference then that allele will not be called out for that sample. But when compared to other samples the allele was reported as snps because it not matchin ...
written 8 weeks ago by Kritika250
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Comment: C: How to call all the allele in samples
... No Usually in VCF file The position will reflect having snps when compared with reference. I want vcf file format where all the positions are called irrelevant of snps / indel or or same allele ...
written 8 weeks ago by Kritika250
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Comment: C: How to call all the allele in samples
... Its freebayes i have edited that Actual vcf formats is below chr1 26 . G A 3046.92 . AB=0.537688;ABP=5.46548;AC=1;AF=0.5;AN=2;AO=107;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=3.51765;EPPR=5.3706;GTI=0;LEN=1;MEANALT=1;MQM=58.8598;MQMR=60;NS=1;NUMALT=1;ODDS=596.641;PAIR ...
written 8 weeks ago by Kritika250
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How to call all the allele in samples
... I have snps information for all the samples compared to references. I want all the allele whether snps or match with reference in vcf format How can i achieve this Sample 1 chr1 26 . G A 3046.92 GT:DP:AD:RO:QR:AO:QA:GL 0/1:199:92,107:92:3723:107:4258:-321.956,0 ...
snp written 8 weeks ago by Kritika250
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Comment: C: How to replace row with another row in linux having NA and nucleotide bases
... The columns are seperated by 2 spaces ...
written 12 weeks ago by Kritika250

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