User: GirKir1424

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GirKir142480
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Location:
India
Last seen:
11 hours ago
Joined:
1 year, 11 months ago
Email:
k************@gmail.com

Posts by GirKir1424

<prev • 86 results • page 1 of 9 • next >
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No RS id was called in vcf file after giving dbsnp command
... Hi I have DBSNP VCf file for my genome i used GATK for variant calling with option -d dbsnp.vcf No RS id were reported in my out.vcf . That means all my SNP in out.vcf is novel !? Then i edited my dbsnp.vcf chromosome name same like my ref.fasta and bam file rerun GATK using this edited dbsnp. ...
no match dbsnp snp written 12 hours ago by GirKir142480
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Comment: C: SNP analysis of Allotetraploid genome
... So you meant to say in my freebayes tool I have to set ploidy parameter as 2 rather 4 right !! ...
written 13 days ago by GirKir142480
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How to tackle homeologous region which calling SNP for Allotetraploid genome
... Hello I recently got SNP analysis of allotetraploid genome(AADD genome type) My steps are Fastqc Trimming next is mapping onto reference genome My concern is with homoelogous region how should i tackle this while mapping? Is there quality filtering parameter which can tackle homoelogous regio ...
snps allotetraploid written 14 days ago by GirKir142480
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Comment: C: SNP analysis of Allotetraploid genome
... Hi @cschu181 How should i treat homoelogous as diploid i have reference genome of samples (Cotton AADD type ). ...
written 15 days ago by GirKir142480
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Comment: C: How to Visulaise Genes per sample (Text visualisation)
... Hi @steve This is awesome but my data is getting overlap only way to solve this is circular visulisations ...
written 20 days ago by GirKir142480
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Comment: C: How to Visulaise Genes per sample (Text visualisation)
... Hi Can i get some thing like this https://ibb.co/kvgDxG ( d3.js images of circular dendogram) in R as well ...
written 20 days ago by GirKir142480
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How to Visulaise Genes per sample (Text visualisation)
... Hi I have character matrix . I want to visualize all gene per sample . That means my all genes will be visible with there sample name Is there any approach to do this MED20_Average Glycyrrhizic_acid_rep_1 YIPF2_Average Glycyrrhizic_acid_rep_1 PISD Glycyrrhizic_acid_rep_1 ...
visualisation text written 21 days ago by GirKir142480 • updated 21 days ago by steve1.3k
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Comment: C: how to plot unique genes for 103 samples
... Hi @Kevin My query is if suppose i have 103 samples all samples have unique genes signatures. I want make plot such way that genes are visible with samples name ...
written 21 days ago by GirKir142480
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Comment: C: how to plot unique genes for 103 samples
... @WouterDeCoster my purpose is just to view data instead viewing single files ...
written 26 days ago by GirKir142480
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how to plot unique genes for 103 samples
... Hi I have 102 samples with there unique genes list Each samples has there own unique genes. I want to visualize this genes per sample in some graphical? Is there any tool or methods to do this? ...
genes visualisation plot written 26 days ago by GirKir142480

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Popular Question 13 days ago, created a question with more than 1,000 views. For SAM line does not contain at least 11 tab-delimited fields
Popular Question 6 months ago, created a question with more than 1,000 views. For SAM line does not contain at least 11 tab-delimited fields
Popular Question 13 months ago, created a question with more than 1,000 views. For SAM line does not contain at least 11 tab-delimited fields
Popular Question 17 months ago, created a question with more than 1,000 views. For to run bowtie on multiple fastq file

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