User: Kritika

gravatar for Kritika
Kritika250
Reputation:
250
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Trusted
Location:
India
Last seen:
3 weeks, 3 days ago
Joined:
2 years, 7 months ago
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k************@gmail.com

Posts by Kritika

<prev • 148 results • page 1 of 15 • next >
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RAPIDR giving error of subscript outof bound for NIPt analysis
... Hi , I have data for NIPT analysis 2 female 2 male and one test. When i running ref.set <- createReferenceSetFromCounts("binnecounts", outcomes, gcCorrect = FALSE, PCA = FALSE, method ="NCV") I am getting error **Error in cleaned.good.ratios[j, chr.pos] : subscript out of bounds** Is ...
rapidr nipt written 24 days ago by Kritika250
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(Closed) How to make single bam file from splited bam files
... Hi All, I have bam file splitted into all 23 chromosome(chr1.bam .... chr23.bam) for 1 sample. I want to make single bam file of all chromosome splitted bam file. And sort it using chr name ...
single file bam split written 24 days ago by Kritika250
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How to Metanalysis of affymetrix chip (Clariom S and U133 a2 )
... Hi All I know this question is asked previously many time. But i am facing some different issues . I have CEL file of Clariom S and U133 a2 affymetirx chip. CDF file for Clariom S is not available. I want to do meta-analysis of this data. I tried VirtualArray but its not working in my system. Is ...
clarioms cross normalisation written 3 months ago by Kritika250
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Comment: C: How to call all the allele in samples
... yes i did google and i uderstood but fro freebayes gvcf option is not working. ...
written 4 months ago by Kritika250
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Comment: C: How to call all the allele in samples
... Is there any way that i keep my sample 1 as reference and call the snps from other samples. Sample 1 i have is bam file. ...
written 4 months ago by Kritika250
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Comment: C: How to call all the allele in samples
... Do you know any tool which can help? ...
written 5 months ago by Kritika250
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Comment: C: How to call all the allele in samples
... What is gvcf. If it will show all positions whatever the nucleotide is called including whether it's homozygous or heterozygous then gvcf will be use full for me ...
written 5 months ago by Kritika250
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Comment: A: How to call all the allele in samples
... My customer wants to know the difference in snps between samples. So if one position the allele is present in one sample which also matching to reference then that allele will not be called out for that sample. But when compared to other samples the allele was reported as snps because it not matchin ...
written 5 months ago by Kritika250
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Comment: C: How to call all the allele in samples
... No Usually in VCF file The position will reflect having snps when compared with reference. I want vcf file format where all the positions are called irrelevant of snps / indel or or same allele ...
written 5 months ago by Kritika250
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Comment: C: How to call all the allele in samples
... Its freebayes i have edited that Actual vcf formats is below chr1 26 . G A 3046.92 . AB=0.537688;ABP=5.46548;AC=1;AF=0.5;AN=2;AO=107;CIGAR=1X;DP=199;DPB=199;DPRA=0;EPP=3.51765;EPPR=5.3706;GTI=0;LEN=1;MEANALT=1;MQM=58.8598;MQMR=60;NS=1;NUMALT=1;ODDS=596.641;PAIR ...
written 5 months ago by Kritika250

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Popular Question 7 weeks ago, created a question with more than 1,000 views. For How to plot MA plot and volcano plot by using cummeRbund
Popular Question 4 months ago, created a question with more than 1,000 views. For How to plot MA plot and volcano plot by using cummeRbund
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Popular Question 5 months ago, created a question with more than 1,000 views. For SAM line does not contain at least 11 tab-delimited fields
Great Question 5 months ago, created a question with more than 5,000 views. For to run bowtie on multiple fastq file
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Teacher 7 months ago, created an answer with at least 3 up-votes. For A: how can I analysis data from ebi.uk
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Popular Question 8 months ago, created a question with more than 1,000 views. For SAM line does not contain at least 11 tab-delimited fields
Popular Question 14 months ago, created a question with more than 1,000 views. For SAM line does not contain at least 11 tab-delimited fields
Popular Question 21 months ago, created a question with more than 1,000 views. For SAM line does not contain at least 11 tab-delimited fields
Popular Question 2.1 years ago, created a question with more than 1,000 views. For to run bowtie on multiple fastq file

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