User: Kritika

gravatar for Kritika
Kritika260
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India
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2 months ago
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3 years ago
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Posts by Kritika

<prev • 150 results • page 1 of 15 • next >
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How to perform mass spec analysis
... Hi , I Have 18 iTRAQ.raw file got it from orbitary mass spec machine. I am not sure which sample is control and which sample is test. I have one gene for which i want to get protein sequences. i have made amino acid fasta file of this gene. Now i want to look for protein sequences in my mass spec ...
mass spec analysis written 9 weeks ago by Kritika260
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How to predict CNV based on Gene Expression dataset
... Hi , I have Microarray dataset of Gene expression. I want to predict CNV based on this Microarray Gene expression dataset. Is there any possibility to do this?. Is there any tools available which can help me.? ...
gene expression cnv written 4 months ago by Kritika260 • updated 4 months ago by h.mon23k
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RAPIDR giving error of subscript outof bound for NIPt analysis
... Hi , I have data for NIPT analysis 2 female 2 male and one test. When i running ref.set <- createReferenceSetFromCounts("binnecounts", outcomes, gcCorrect = FALSE, PCA = FALSE, method ="NCV") I am getting error **Error in cleaned.good.ratios[j, chr.pos] : subscript out of bounds** Is ...
rapidr nipt written 5 months ago by Kritika260
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(Closed) How to make single bam file from splited bam files
... Hi All, I have bam file splitted into all 23 chromosome(chr1.bam .... chr23.bam) for 1 sample. I want to make single bam file of all chromosome splitted bam file. And sort it using chr name ...
single file bam split written 5 months ago by Kritika260
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How to Metanalysis of affymetrix chip (Clariom S and U133 a2 )
... Hi All I know this question is asked previously many time. But i am facing some different issues . I have CEL file of Clariom S and U133 a2 affymetirx chip. CDF file for Clariom S is not available. I want to do meta-analysis of this data. I tried VirtualArray but its not working in my system. Is ...
clarioms cross normalisation written 8 months ago by Kritika260
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Comment: C: How to call all the allele in samples
... yes i did google and i uderstood but fro freebayes gvcf option is not working. ...
written 9 months ago by Kritika260
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Comment: C: How to call all the allele in samples
... Is there any way that i keep my sample 1 as reference and call the snps from other samples. Sample 1 i have is bam file. ...
written 9 months ago by Kritika260
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Comment: C: How to call all the allele in samples
... Do you know any tool which can help? ...
written 9 months ago by Kritika260
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Comment: C: How to call all the allele in samples
... What is gvcf. If it will show all positions whatever the nucleotide is called including whether it's homozygous or heterozygous then gvcf will be use full for me ...
written 9 months ago by Kritika260
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Comment: A: How to call all the allele in samples
... My customer wants to know the difference in snps between samples. So if one position the allele is present in one sample which also matching to reference then that allele will not be called out for that sample. But when compared to other samples the allele was reported as snps because it not matchin ...
written 9 months ago by Kritika260

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Great Question 10 months ago, created a question with more than 5,000 views. For to run bowtie on multiple fastq file
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Popular Question 2.5 years ago, created a question with more than 1,000 views. For to run bowtie on multiple fastq file

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