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5
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replies
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How to get percent identity from bam file ?
bwa bam samtools
updated 18 months ago by 6.3k • written 6.1 years ago by ▴ 230
2
votes
5
replies
1.3k
views
Assembly plasmid with tandem repeats of the same insert
assembly sequencing
updated 3.6 years ago by ▴ 490 • written 3.6 years ago by ▴ 230
0
votes
1
reply
518
views
Deseq2 with continous variable
deseq2
updated 3.9 years ago by 87k • written 3.9 years ago by ▴ 230
1
vote
8
replies
1.5k
views
Remove fungi from human genome assemblies
minimap dnaseq
updated 3.9 years ago by 20 • written 4.1 years ago by ▴ 230
0
votes
8
replies
4.2k
views
Normalization methods for metagenomics WGS data (not 16S data)
deseq2 edgeR normalization
updated 4.3 years ago by ▴ 40 • written 7.0 years ago by ▴ 230
1
vote
7
replies
3.7k
views
mummer dot plot
mummer dotplot
4.6 years ago by David ▴ 230
0
votes
2
replies
1.3k
views
What is the symmetric identity percent
identity genome
4.9 years ago by David ▴ 230
5
votes
8
replies
6.6k
views
Relative abundance fro metagenomics samples
metagenomics bwa taxonomy relative abundance
updated 5.1 years ago by ▴ 160 • written 7.2 years ago by ▴ 230
0
votes
0
replies
1.1k
views
Pathway enrichment analysis bacterial genome
R kegg clusterprofiler david metacyc
updated 5.1 years ago by 20 • written 5.2 years ago by ▴ 230
0
votes
3
replies
1.6k
views
haplotypeCaller groups comparison
gatk
5.2 years ago by David ▴ 230
2
votes
3
replies
852
views
Identify deletion in multiple bam files compared to the same bacterial reference
bedtools bam
5.2 years ago by David ▴ 230
0
votes
2
replies
3.1k
views
IGV alignment explanation
igv bam
updated 5.2 years ago by 35k • written 5.2 years ago by ▴ 230
1
vote
2
replies
2.1k
views
Gene coverage from Bam files
bedtools
updated 5.3 years ago by 16k • written 5.3 years ago by ▴ 230
2
votes
5
replies
1.3k
views
Compare samples from bacterial genome
deseq metagenomics
5.4 years ago by David ▴ 230
3
votes
5
replies
5.6k
views
Featurecounts normalize by gene length
featureCount tpm deseq2
5.4 years ago by David ▴ 230
1
vote
3
replies
1.5k
views
bedcoverage output while looking for missing genes
bedtools
updated 6.0 years ago by 87k • written 6.0 years ago by ▴ 230
3
votes
4
replies
4.0k
views
Get length of the alignment from bam file
bam
updated 6.0 years ago by 161k • written 6.0 years ago by ▴ 230
0
votes
3
replies
2.1k
views
Cannot align reads to plasmid
sequencing bwa
updated 6.2 years ago by 35k • written 6.2 years ago by ▴ 230
0
votes
3
replies
1.9k
views
Insert size on PE 2*250
sequencing
6.2 years ago by David ▴ 230
0
votes
1
reply
1.3k
views
slurm and CfnCluster auto-scaling
sequence alignment
updated 6.3 years ago by 20 • written 6.3 years ago by ▴ 230
3
votes
12
replies
2.4k
views
How to reduce cross mapping alignments with paired-end reads ?
bwa genome dnaseq
6.6 years ago by David ▴ 230
0
votes
4
replies
2.8k
views
Lowest common ancestor for taxonomy
lca taxonomy ncbi tree
updated 6.6 years ago by 20k • written 6.6 years ago by ▴ 230
9
votes
11
replies
5.8k
views
Parse fasta header with regex in python
biopython python fasta regex
updated 6.7 years ago by 11k • written 6.7 years ago by ▴ 230
10
votes
18
replies
7.6k
views
Download NCBI genomes using taxonomy id (taxid)
ncbi python efetch biopython
updated 2.6 years ago by 54k • written 7.1 years ago by ▴ 230
0
votes
2
replies
1.3k
views
Simulated overlapping paired end reads for 16S
bbmap
6.8 years ago by David ▴ 230
0
votes
1
reply
1.6k
views
Get non redundant from Bacteria Archaea Fungi
ncbi RNA-Seq
6.8 years ago by David ▴ 230
1
vote
2
replies
1.9k
views
Lowest common ancestor
lca taxonomy
6.8 years ago by David ▴ 230
5
votes
2
replies
4.6k
views
fastqc gc-content peak and adapter content
fastqc
6.8 years ago by David ▴ 230
2
votes
5
replies
4.7k
views
Normalize bedtools gene coverage by total number of reads
bedtools normalization metagenomics
6.9 years ago by David ▴ 230
10
votes
3
replies
3.3k
views
Metagenomics functional annotation hmmsearch vs Blast ???
eggnog hmm metagenomics blast
updated 7.0 years ago by 4.1k • written 7.1 years ago by ▴ 230
0
votes
0
replies
1.9k
views
UniFrac in R with just the OTU table?
R unifrac phylogeny metagenomics
7.0 years ago by David ▴ 230
5
votes
7
replies
9.1k
views
Get phylogenetic tree from abundance table
phylogenetic newick ncbi
7.0 years ago by David ▴ 230
0
votes
2
replies
1.8k
views
Gene copy number
metagenomics bwa bbmap
7.2 years ago by David ▴ 230
1
vote
5
replies
3.2k
views
Contigs Taxonomy from assembled metagenomes
metagenomics metagenome taxonomy contig
7.2 years ago by David ▴ 230
0
votes
2
replies
1.6k
views
How to reassembly metagenomics bins - need advice??
metagenomics Assembly bwa bowtie2
7.3 years ago by David ▴ 230
1
vote
6
replies
3.4k
views
Find human contaminants in metagenomics microbiome studies
bwa microbiome metagenomics wgs
updated 2.0 years ago by ▴ 10 • written 7.3 years ago by ▴ 230
0
votes
1
reply
2.0k
views
Design primer for a family of bacterial genes
sequencing PCR sequence
updated 7.4 years ago by ★ 4.0k • written 7.4 years ago by ▴ 230
2
votes
2
replies
2.4k
views
Scaffolding for metagenomics
abyss assembly
updated 21 months ago by 43k • written 8.2 years ago by ▴ 230
0
votes
0
replies
1.6k
views
Metagenomics scaffolding tools ??
scaffolding metagenomics
8.2 years ago by David ▴ 230
39 results • Page 1 of 1
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