User: andreiareis1987

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Posts by andreiareis1987

<prev • 12 results • page 1 of 2 • next >
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Comment: C: hg19 features -> mm10
... Thanks for your quickly reply. I will try the tss using ensembl perl API. For the kmers is more than a format. The number dont match very well... i read we have several algoritms to calculate kmers i wounder if i am using the right one ... Thanks again. ...
written 2.1 years ago by andreiareis198730
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hg19 features -> mm10
... Hi guys, I have been with several problems trying to figure out the way to get some files to run a specific program. The program is called Methy-pipe (http://journals.plos.org/plosone/article?id=10.1371/journal.pone.010036) Its acctually very cool program that makes your bisulphite data analysis i ...
mm10 watson.strand tsswindows kmer written 2.1 years ago by andreiareis198730 • updated 2.1 years ago by Jean-Karim Heriche21k
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Comment: C: % Alternative Splicing
... Sorry about my lack of clearness. My data is from ensembl: homo sapiens version 89.38. I downloaded the gff file for all genome to get the specific cellular GO ids according to the paper https://bmcevolbiol.biomedcentral.com/articles/10.1186/1471-2148-7-188 that i am reviewing. For the alternative ...
written 2.2 years ago by andreiareis198730
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% Alternative Splicing
... Hi guys, I am "remaking" some tasks (with updated data) from a paper and one of them is get alternative splicing frequency for some GO categories but i am stuck i read again and again the paper and i don't figure out how they got the numbers ... and asking for help to the writer not good ideia beca ...
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help geometadb r package
... Hi guys, I am new in Geometadb package in R! I have been doing some tests to understand how it works geometadb. Well my goal its to join all the tables (gsm, gpl, gse and gds) and next filter the metadata... but now i am focus on looking for all variables and data to understand its right or not t ...
geometadb R metadata written 3.8 years ago by andreiareis198730 • updated 15 months ago by RamRS25k
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Answer: A: regex dont match why??
... Problem resolved!   Conclusion: check always the files for extra spaces and stuff ahaha  ...
written 3.8 years ago by andreiareis198730
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Comment: C: regex dont match why??
... can i sent to your mail my script and my files?  ...
written 3.8 years ago by andreiareis198730
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Comment: C: regex dont match why??
... yes regex works on single line its just for header and the $header_sub variable only select the match for IDs example YER062C. my script works very well for others files that contains more than 300 IDs and search in genome file with more than 6000 sequences. The script retrieve all sequences ID's fr ...
written 3.8 years ago by andreiareis198730
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Answer: A: regex dont match why??
... The match seems to work just fine but when i run do not retrieve the sequence that i want! :( ...
written 3.8 years ago by andreiareis198730
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Answer: A: regex dont match why??
... WOW i didnt know bout this site :D  I will try it! Thanks alot. ...
written 3.8 years ago by andreiareis198730

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