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Extracting list of mutations from .tsv file and arrange them in protein specific with binary 0 (Absent) and 1 (Present) values
bash scripting awk Python
2.0 years ago by k.kathirvel93 ▴ 300
1
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3
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671
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Merge two .fastq files from two different lane
loop NGS merge fastq cat
updated 2.2 years ago by 141k • written 2.2 years ago by ▴ 300
1
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4
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1.0k
views
Where I can get pipeline for covid genome assembly?
pipeline assembly Covid genome
updated 2.3 years ago by 8.9k • written 2.3 years ago by ▴ 300
0
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1
reply
718
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How to obtain consensus fasta sequence from fasta file converted from BAM file?
Assembly fasta BAMtofasta
updated 2.3 years ago by 21k • written 2.3 years ago by ▴ 300
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707
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Comment: Comment: Bowtie BAM to Fasta extraction: Only mapped reads in single contig
2.3 years ago by k.kathirvel93 ▴ 300
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2
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707
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Bowtie BAM to Fasta extraction: Only mapped reads in single contig
genome BAM fasta assembly Covid
2.3 years ago by k.kathirvel93 ▴ 300
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3.0k
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Comment: Comment: How can i get gene name instead of gene ID from prepDE.py after STRINGtie?
2.8 years ago by k.kathirvel93 ▴ 300
8
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10
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2.5k
views
How to remove sequence reads contains more than 1 X from multifasta file?
sequence sequencing
updated 4.0 years ago by ▴ 100 • written 4.0 years ago by ▴ 300
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2
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2.5k
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Comment: C: How to remove sequence reads contains more than 1 X from multifasta file?
4.0 years ago by k.kathirvel93 ▴ 300
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0
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2.5k
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Comment: C: How to remove sequence reads contains more than 1 X from multifasta file?
4.0 years ago by k.kathirvel93 ▴ 300
1
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4
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2.6k
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Phylogenetic tree construction from MAFFT aligned large genome dataset ?
alignment sequence genome
updated 4.0 years ago by ▴ 630 • written 4.0 years ago by ▴ 300
0
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1
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1.5k
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Comment: C: how to remove specific sequences from multi-fasta file which contains N ?
4.0 years ago by k.kathirvel93 ▴ 300
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3
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1.5k
views
how to remove specific sequences from multi-fasta file which contains N ?
genome sequencing sequence alignment
4.0 years ago by k.kathirvel93 ▴ 300
0
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1
reply
400
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extract only reads repeated more than 10 times from BLASTp excel sheet output
Assembly alignment sequence
4.0 years ago by k.kathirvel93 ▴ 300
0
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1
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2.8k
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Comment: C: How to extract sequences from multi fasta file, which contains specific primers?
4.0 years ago by k.kathirvel93 ▴ 300
0
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1
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2.8k
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Comment: C: How to extract sequences from multi fasta file, which contains specific primers?
4.0 years ago by k.kathirvel93 ▴ 300
3
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2
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1.6k
views
Sort header from the multifasta sequnce file into only gene name
genome alignment sequencing sequence gene
updated 4.0 years ago by ▴ 200 • written 4.0 years ago by ▴ 300
0
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1
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2.8k
views
Comment: C: How to extract sequences from multi fasta file, which contains specific primers?
4.0 years ago by k.kathirvel93 ▴ 300
4
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7
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2.8k
views
How to extract sequences from multi fasta file, which contains specific primers?
Assembly genome next-gen sequencing sequence
updated 4.0 years ago by 4.1k • written 4.0 years ago by ▴ 300
0
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0
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623
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Can anyone suggest me "How to predict smallRNAs from p.aeruginosa whole genome data"?
genome next-gen sequencing sequence
updated 4.9 years ago by 20 • written 5.0 years ago by ▴ 300
0
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1
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1.1k
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How to label Phage, resistance and virulence genes name in BRIG blast ring ?
genome next-gen sequencing sequence gene
4.9 years ago by k.kathirvel93 ▴ 300
0
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0
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1.1k
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Comment: C: convert entrez ID to miRNA
5.0 years ago by k.kathirvel93 ▴ 300
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0
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1.1k
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Comment: C: convert entrez ID to miRNA
5.0 years ago by k.kathirvel93 ▴ 300
0
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0
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695
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how to find RT- qPCR data for perticular SEQC RNA-seq data set?
RNA-Seq rna-seq next-gen genome
5.2 years ago by k.kathirvel93 ▴ 300
0
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1
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13k
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Comment: C: Volcano_plot using R
5.2 years ago by k.kathirvel93 ▴ 300
1
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1
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13k
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Answer: C: Volcano_plot using R
5.2 years ago by k.kathirvel93 ▴ 300
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0
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1.7k
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Comment: C: Parsnp Error. Why?
5.2 years ago by k.kathirvel93 ▴ 300
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0
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1.7k
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Comment: C: Parsnp Error. Why?
5.2 years ago by k.kathirvel93 ▴ 300
1
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3
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1.7k
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Parsnp Error. Why?
SNP software error next-gen snp genome
5.2 years ago by k.kathirvel93 ▴ 300
0
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1
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3.5k
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Answer: A: Can logCPM in edgeR be used to compare expression of genes ?
5.3 years ago by k.kathirvel93 ▴ 300
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1
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1.4k
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Comment: C: How can I extract SNP from bacterial genome?
5.3 years ago by k.kathirvel93 ▴ 300
0
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4
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1.4k
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How can I extract SNP from bacterial genome?
snp next-gen sequencing gene genome
updated 5.3 years ago by ▴ 140 • written 5.3 years ago by ▴ 300
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1
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1.7k
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Comment: C: target gene selection for miRNA
5.3 years ago by k.kathirvel93 ▴ 300
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0
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1.1k
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Comment: C: sorting columns by same values to do DEG analysis
5.3 years ago by k.kathirvel93 ▴ 300
1
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0
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924
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Comment: C: How to extract information from RNA-seq data?
5.3 years ago by k.kathirvel93 ▴ 300
0
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1
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924
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Answer: A: How to extract information from RNA-seq data?
5.3 years ago by k.kathirvel93 ▴ 300
2
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5
replies
1.4k
views
Suggestions needed for mIRNA-human target prediction ?
rna-seq next-gen gene
updated 5.4 years ago by • 0 • written 5.4 years ago by ▴ 300
1
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1
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1.4k
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Comment: C: Suggestions needed for mIRNA-human target prediction ?
5.4 years ago by k.kathirvel93 ▴ 300
1
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2
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1.3k
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Comment: C: How to remove special characters from text files?
5.4 years ago by k.kathirvel93 ▴ 300
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0
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1.5k
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Comment: C: miRNA mRNA interaction studies
5.4 years ago by k.kathirvel93 ▴ 300
0
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1
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1.5k
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Comment: C: miRNA mRNA interaction studies
5.4 years ago by k.kathirvel93 ▴ 300
0
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1
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1.5k
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Comment: C: miRNA mRNA interaction studies
5.4 years ago by k.kathirvel93 ▴ 300
20
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11
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2.4k
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miRNA-seq DE analysis with duplicate replicates. Am i correct?
R next-gen
updated 5.4 years ago by ▴ 50 • written 5.4 years ago by ▴ 300
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2
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2.4k
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Comment: A: miRNA-seq DE analysis with duplicate replicates. Am i correct?
5.4 years ago by k.kathirvel93 ▴ 300
0
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0
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3.0k
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Comment: C: Differential expression analysis on miRNA count files
5.4 years ago by k.kathirvel93 ▴ 300
0
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2
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5.9k
views
Comment: C: BLAST all against all
5.4 years ago by k.kathirvel93 ▴ 300
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1
reply
2.2k
views
Comment: A: Primer design from mapping file ?
5.5 years ago by k.kathirvel93 ▴ 300
1
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6
replies
4.6k
views
How to extract unique values between columns in R ?
R gene
updated 5.5 years ago by ▴ 720 • written 5.5 years ago by ▴ 300
0
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0
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4.6k
views
Comment: C: How to extract unique values between columns in R ?
5.5 years ago by k.kathirvel93 ▴ 300
0
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0
replies
11k
views
Comment: C: SRA files bulk downloads
5.5 years ago by k.kathirvel93 ▴ 300
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