User: raya.girish

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raya.girish20
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Posts by raya.girish

<prev • 56 results • page 1 of 6 • next >
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Comment: C: how to plot PCA for microarray normalized data
... Yes i saw that limma link ! Will the link which you sent me for PCA will it be able to give me PCA plot for 19K genes? ...
written 4 days ago by raya.girish20
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Comment: C: how to plot PCA for microarray normalized data
... Hi b.nota Actually i am using new affyemtrix chip for which CDF file is not available so i was not looking for bioconductor packages otherwise it will ask me to import or provide CDF file ...
written 5 days ago by raya.girish20
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how to plot PCA for microarray normalized data
... Hi, I have RMA normalised file from microarray gene chip I have 4 groups A,B,C,D(4 sample in group A , 5 sample in groups B, 3 samples in group C , 6 samples in group D) with 19K genes with there normalized value. I need to perform PCA over this data. How should i proceed with this ? as i do not ...
pca written 5 days ago by raya.girish20 • updated 5 days ago by b.nota5.4k
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how to find prevalent snp for particular list of disease ?
... Hi , I have list of disease with there genes. I want to know is there any way that i can find it out prevalent SNP associated with particular gene/disease by providing list of Genes or Disease ? ...
snpmining snp prevelant written 3 months ago by raya.girish20 • updated 3 months ago by finswimmer8.1k
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How to get publications associated with list of genes
... Hi , I have list of genes with information whether the genes is deleted or duplicated. I want to know is there any easiest way where i can paste the list of genes and key words like "autism" and i get all the related publication in which autism related genes (my gene list) are highlighted with ev ...
text mining publication mining written 5 months ago by raya.girish20 • updated 4 months ago by Maria_Levchenko70
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Comment: C: To detect breakpoint by cytoscan 750 K microarray technology
... no with this breakpoint i need to make probes for fish. But my customer is saying to me that it is possible with microarray to check for unbalanced translocations. ...
written 7 months ago by raya.girish20
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Comment: C: To detect breakpoint by cytoscan 750 K microarray technology
... Okay. But can i detect unbalanced translocations using Cytoscan750K microarray and using R for cytoscan 750K ...
written 7 months ago by raya.girish20
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Comment: C: To detect breakpoint by cytoscan 750 K microarray technology
... This is the result i got from Rawcopy. https://ibb.co/c02TYn How should i interpret it now also how will i be able to whether its unbalanced or balanced translocations ...
written 7 months ago by raya.girish20
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Comment: C: To detect breakpoint by cytoscan 750 K microarray technology
... Kevin Just want to confirm I am in correct path breakpoint will loss or gain at particular position of any arms right. So for example I have Loss in chr12 with position showing 12q31(10-100) X3 So loss is deletion at position 12q31 start coordinate 10 and end coordinate 100. This will be my breakpo ...
written 7 months ago by raya.girish20
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Comment: C: To detect breakpoint by cytoscan 750 K microarray technology
... Hi Kevin This script is not working for me cdf <- AffymetrixCdfFile$byChipType("CytoScan750K_Array") I am unbale to find CDF file for Cytoscan750_Array in Bioconductor. If it is not available there can you please tell me where will i get that file . ...
written 7 months ago by raya.girish20

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