User: raya.girish

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raya.girish20
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Posts by raya.girish

<prev • 56 results • page 1 of 6 • next >
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Comment: C: how to plot PCA for microarray normalized data
... Yes i saw that limma link ! Will the link which you sent me for PCA will it be able to give me PCA plot for 19K genes? ...
written 20 months ago by raya.girish20
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Comment: C: how to plot PCA for microarray normalized data
... Hi b.nota Actually i am using new affyemtrix chip for which CDF file is not available so i was not looking for bioconductor packages otherwise it will ask me to import or provide CDF file ...
written 20 months ago by raya.girish20
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how to plot PCA for microarray normalized data
... Hi, I have RMA normalised file from microarray gene chip I have 4 groups A,B,C,D(4 sample in group A , 5 sample in groups B, 3 samples in group C , 6 samples in group D) with 19K genes with there normalized value. I need to perform PCA over this data. How should i proceed with this ? as i do not ...
pca written 20 months ago by raya.girish20 • updated 20 months ago by Benn8.0k
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how to find prevalent snp for particular list of disease ?
... Hi , I have list of disease with there genes. I want to know is there any way that i can find it out prevalent SNP associated with particular gene/disease by providing list of Genes or Disease ? ...
snpmining snp prevelant written 23 months ago by raya.girish20 • updated 23 months ago by finswimmer13k
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How to get publications associated with list of genes
... Hi , I have list of genes with information whether the genes is deleted or duplicated. I want to know is there any easiest way where i can paste the list of genes and key words like "autism" and i get all the related publication in which autism related genes (my gene list) are highlighted with ev ...
text mining publication mining written 2.1 years ago by raya.girish20 • updated 24 months ago by Maria_Levchenko60
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Comment: C: To detect breakpoint by cytoscan 750 K microarray technology
... no with this breakpoint i need to make probes for fish. But my customer is saying to me that it is possible with microarray to check for unbalanced translocations. ...
written 2.3 years ago by raya.girish20
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Comment: C: To detect breakpoint by cytoscan 750 K microarray technology
... Okay. But can i detect unbalanced translocations using Cytoscan750K microarray and using R for cytoscan 750K ...
written 2.3 years ago by raya.girish20
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Comment: C: To detect breakpoint by cytoscan 750 K microarray technology
... This is the result i got from Rawcopy. https://ibb.co/c02TYn How should i interpret it now also how will i be able to whether its unbalanced or balanced translocations ...
written 2.3 years ago by raya.girish20
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Comment: C: To detect breakpoint by cytoscan 750 K microarray technology
... Kevin Just want to confirm I am in correct path breakpoint will loss or gain at particular position of any arms right. So for example I have Loss in chr12 with position showing 12q31(10-100) X3 So loss is deletion at position 12q31 start coordinate 10 and end coordinate 100. This will be my breakpo ...
written 2.3 years ago by raya.girish20
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Comment: C: To detect breakpoint by cytoscan 750 K microarray technology
... Hi Kevin This script is not working for me cdf <- AffymetrixCdfFile$byChipType("CytoScan750K_Array") I am unbale to find CDF file for Cytoscan750_Array in Bioconductor. If it is not available there can you please tell me where will i get that file . ...
written 2.3 years ago by raya.girish20

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