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Normalization strategies for comparing mapped reads across samples in RNA-seq
normalization rnaseq
updated 22 days ago by 43k • written 22 days ago by ▴ 640
1
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1
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196
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Seeking for edgeR TMM Normalization calcul example
tmm edgeR deseq2
updated 29 days ago by ★ 16k • written 4 weeks ago by ▴ 640
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644
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Comment: Comment: Filter out doublet and Clustering
6 weeks ago by Picasa ▴ 640
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1
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361
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Comment: Comment: GO enrichment plot with dotplot strange axis
10 weeks ago by Picasa ▴ 640
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3
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361
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GO enrichment plot with dotplot strange axis
enrichment go plot
updated 10 weeks ago by ★ 2.3k • written 11 weeks ago by ▴ 640
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0
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43k
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Comment: Comment: ClusterProfiler : What is GeneRatio and BgRatio?
11 weeks ago by Picasa ▴ 640
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1
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445
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Seurat: How to get all genes name of a cell ?
seurat
updated 10 months ago by ★ 1.8k • written 10 months ago by ▴ 640
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0
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10k
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Comment: Comment: DESeq2 modelling and Wald's test
11 months ago by Picasa ▴ 640
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1
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522
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DESeq2 : parameter of Negative Binomial model in a context of gene expression
rnaseq DESeq2 NB
11 months ago by Picasa ▴ 640
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11
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6.2k
views
7 follow
PCA on VCF
pca vcf
updated 20 months ago by 22k • written 8.0 years ago by ▴ 640
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6
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4.2k
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Merging vcf files ?
vcf
updated 22 months ago by • 0 • written 7.8 years ago by ▴ 640
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1
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843
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Comment: Comment: Alignment of genomes and get statistics about alignment
2.5 years ago by Picasa ▴ 640
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3
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843
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Alignment of genomes and get statistics about alignment
genome
updated 2.5 years ago by ▴ 490 • written 2.5 years ago by ▴ 640
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2
replies
738
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Primers and multimapping ?
primer3
updated 2.6 years ago by 81k • written 2.6 years ago by ▴ 640
2
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1
reply
781
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R package for structural variation representation ?
structural variation mummer
updated 2.6 years ago by 3.9k • written 2.6 years ago by ▴ 640
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0
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4.8k
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Comment: Comment: repeatmasker species setting
2.7 years ago by Picasa ▴ 640
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1
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6.7k
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Comment: Comment: gene set filter/selection for training ab initio annotation tools
2.8 years ago by Picasa ▴ 640
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1
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6.7k
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Comment: Comment: gene set filter/selection for training ab initio annotation tools
2.8 years ago by Picasa ▴ 640
0
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1
reply
6.7k
views
Comment: Comment: gene set filter/selection for training ab initio annotation tools
2.8 years ago by Picasa ▴ 640
0
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1
reply
6.7k
views
Comment: Comment: gene set filter/selection for training ab initio annotation tools
2.8 years ago by Picasa ▴ 640
0
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1
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6.7k
views
Comment: Comment: gene set filter/selection for training ab initio annotation tools
2.8 years ago by Picasa ▴ 640
2
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7
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3.2k
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Using RNA seq for genome annotation
maker annotation
updated 2.9 years ago by 100k • written 6.9 years ago by ▴ 640
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0
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503
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Phased SNPs with single rad seq data ?
snp rad single
3.0 years ago by Picasa ▴ 640
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0
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647
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Alternative free software for recombination rate estimation ?
radseq joinmap stacks
3.0 years ago by Picasa ▴ 640
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0
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987
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Tools for .hic file visualization
juicer 3d-dna hic
3.1 years ago by Picasa ▴ 640
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1
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3.7k
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Comment: C: Using HiCanu assembler on PacBio Hifi reads
3.4 years ago by Picasa ▴ 640
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1
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804
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Assessing collapsed assembly ?
Assembly paralogue collapsing
updated 3.8 years ago by 6.3k • written 3.8 years ago by ▴ 640
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1
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9.6k
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Comment: C: Create de novo repeat library
3.8 years ago by Picasa ▴ 640
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1
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9.6k
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Comment: C: Create de novo repeat library
3.8 years ago by Picasa ▴ 640
0
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1
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13k
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Comment: C: RAxML outputs: which one I have to take ?
3.9 years ago by Picasa ▴ 640
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1
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3.1k
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Comment: C: ONT fast5 basecalling
3.9 years ago by Picasa ▴ 640
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0
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1.2k
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Comment: C: Best way for phylogenetic tree with missing data
3.9 years ago by Picasa ▴ 640
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0
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21k
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Comment: C: Polish PacBio assembly with latest PacBio tools : an affordable solution for eve
3.9 years ago by Picasa ▴ 640
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1
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1.2k
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Comment: C: Best way for phylogenetic tree with missing data
3.9 years ago by Picasa ▴ 640
2
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5
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1.2k
views
Best way for phylogenetic tree with missing data
phylogenetic tree
updated 3.9 years ago by ★ 27k • written 3.9 years ago by ▴ 640
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1
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1.4k
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Comment: C: Transcript or cds for phylogenetic tree ?
3.9 years ago by Picasa ▴ 640
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3
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1.4k
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Transcript or cds for phylogenetic tree ?
msa phylogenetic
updated 3.9 years ago by 15k • written 3.9 years ago by ▴ 640
1
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0
replies
607
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Subset long reads and optimal coverage
long reads Assembly
updated 3.9 years ago by 20 • written 4.0 years ago by ▴ 640
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1
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2.5k
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Comment: C: Workflow for structural variants from long read sequencing data
3.9 years ago by Picasa ▴ 640
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0
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1.0k
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Comment: C: Structural variation germline vs somatic ?
4.0 years ago by Picasa ▴ 640
0
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0
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1.0k
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Comment: C: Structural variation germline vs somatic ?
4.0 years ago by Picasa ▴ 640
3
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4
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1.0k
views
Structural variation germline vs somatic ?
structural variation germline somatic
updated 4.0 years ago by ▴ 10 • written 4.0 years ago by ▴ 640
0
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1
reply
856
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Comment: C: How to get Gene ID from NCBI accession for non model species ?
4.0 years ago by Picasa ▴ 640
2
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3
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856
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How to get Gene ID from NCBI accession for non model species ?
gene id ncbi accession
updated 4.0 years ago by 141k • written 4.0 years ago by ▴ 640
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1
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1.4k
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Comment: C: RepeatMasker overlap and interpretation
4.1 years ago by Picasa ▴ 640
6
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6
replies
1.3k
views
Where to upload protein coding gene annotation ?
maker protein
updated 4.1 years ago by 8.5k • written 4.1 years ago by ▴ 640
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3
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1.4k
views
RepeatMasker overlap and interpretation
repeat overlap
updated 4.1 years ago by 15k • written 4.1 years ago by ▴ 640
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3
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876
views
Contig longer than mitochondrial sequence. Explanation ?
mitochondrial contig
updated 4.2 years ago by ▴ 290 • written 4.2 years ago by ▴ 640
0
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1
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831
views
hi-c coverage for scaffolding
hi c scaffold Assembly
4.2 years ago by Picasa ▴ 640
0
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1
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6.7k
views
Comment: C: gene set filter/selection for training ab initio annotation tools
4.3 years ago by Picasa ▴ 640
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