User: dnyanada.gokhale

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2 months, 2 weeks ago
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4 years, 2 months ago
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Posts by dnyanada.gokhale

<prev • 5 results • page 1 of 1 • next >
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Comment: C: 1000Genomes population allele frequencies for list of SNPs
... Thank you so much for this solution @Pierre. Could you please tell me how can i write this to a file versus printing it on my screen because I need to get the frequencies for around 500 variants. Thank you so much! ...
written 10 months ago by dnyanada.gokhale10
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Comment: C: michigan imputation server
... Hello Molly and Teresa, I am wondering whether you have figured out how to perform QC steps on the dosage data received after using the DosageConvertor tool? In case you have succeeded please do let me know. Thank you !! ...
written 12 months ago by dnyanada.gokhale10
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Comment: C: Plink unable to read plink.dosage.gz file
... Hi Paul, I was wondering whether you managed to solve the problem of using compressed dosage files? I am at the same stage right now, having received my dosage files from the Michigan Imputation server. I have used DosageConverter to convert the files to plink dosage and now have a set of compresse ...
written 12 months ago by dnyanada.gokhale10
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Comment: C: samtools flagstat interpretation
... Thank you so much, That was my major confusion since I only received bam files not the fastqc ones. ...
written 4.0 years ago by dnyanada.gokhale10
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samtools flagstat interpretation
... Hi All, I am trying to run samtools flagstat to determine whether my bam files contain duplicates. I do not have the fastqc files for these bams. They were already aligned, using BWA I believe and sent over. The samtools flagstat statistics before and after running the mark duplicates tool in Picard ...
assembly next-gen alignment sequencing written 4.1 years ago by dnyanada.gokhale10 • updated 4.1 years ago by Devon Ryan95k

Latest awards to dnyanada.gokhale

Supporter 10 months ago, voted at least 25 times.
Popular Question 3.4 years ago, created a question with more than 1,000 views. For samtools flagstat interpretation

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