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5
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2.5k
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"Segmentation fault" error from running align function in Rsubread package
RNA-Seq
Rsubread
updated 5.7 years ago by
i.sudbery
19k • written 5.7 years ago by
wangdp123
▴ 340
0
votes
1
reply
7.4k
views
Comment:
C: What is the difference between single-cell RNA-Seq and typical RNA-Seq in terms
5.7 years ago by
wangdp123
▴ 340
0
votes
1
reply
2.3k
views
Comment:
C: The failed compilation of Rsubread
5.8 years ago by
wangdp123
▴ 340
0
votes
1
reply
2.3k
views
Comment:
C: The failed compilation of Rsubread
5.8 years ago by
wangdp123
▴ 340
0
votes
5
replies
2.3k
views
The failed compilation of Rsubread
Rsubread
RNA-Seq
5.8 years ago by
wangdp123
▴ 340
6
votes
3
replies
7.4k
views
What is the difference between single-cell RNA-Seq and typical RNA-Seq in terms of data analysis procedure
single-cell
RNA-Seq
updated 5.8 years ago by
Devon Ryan
104k • written 5.8 years ago by
wangdp123
▴ 340
4
votes
2
replies
1.5k
views
samtools and I/O redirection
samtools
5.8 years ago by
wangdp123
▴ 340
0
votes
4
replies
3.2k
views
The errors reported when running snakemake file with log function
snakemake
updated 5.9 years ago by
Devon Ryan
104k • written 5.9 years ago by
wangdp123
▴ 340
0
votes
0
replies
1.9k
views
Tool:
KGCAK: A K-mer based database for genome-wide phylogeny and complexity evaluation
k-mer
gene
genome
updated 10 months ago by
Ram
43k • written 8.1 years ago by
wangdp123
▴ 340
2
votes
1
reply
4.1k
views
The logging file for snakemake
snakemake
log
5.9 years ago by
wangdp123
▴ 340
0
votes
1
reply
2.5k
views
How to normalize the bam files for RNA-Seq samples for visualization
RNA-Seq
normalization
visualize
updated 6.0 years ago by
trausch
★ 1.9k • written 6.0 years ago by
wangdp123
▴ 340
0
votes
0
replies
920
views
The estimate index of codon bias
codon bias
6.1 years ago by
wangdp123
▴ 340
0
votes
1
reply
1.0k
views
Cluster genes based on their codon usage
codon usage
cluster gene
6.1 years ago by
wangdp123
▴ 340
0
votes
1
reply
1.1k
views
Process the VCF files for a huge number of samples
VCF
SNP
InDel
Exome-Seq
6.1 years ago by
wangdp123
▴ 340
9
votes
3
replies
14k
views
How to find the hub genes in the gene co-expression network constructed by WGCNA
WGCNA
hub gene
updated 6.2 years ago by
Kevin Blighe
87k • written 6.2 years ago by
wangdp123
▴ 340
0
votes
1
reply
22k
views
Comment:
C: The RNA-Seq data input for WGCNA in terms of gene co-expression network construc
6.5 years ago by
wangdp123
▴ 340
39
votes
25
replies
22k
views
8 follow
The RNA-Seq data input for WGCNA in terms of gene co-expression network construction
WGCNA
network
updated 6.5 years ago by
Kevin Blighe
87k • written 6.5 years ago by
wangdp123
▴ 340
0
votes
0
replies
1.1k
views
The strategy to annotate the transcriptional factors from transcripts
TF
annotation
6.6 years ago by
wangdp123
▴ 340
3
votes
3
replies
2.5k
views
Draw the phylogeny from RNA-Seq data
RNA-Seq
phylogeny
species
tissues
treatment
updated 6.7 years ago by
Biostar
20 • written 6.7 years ago by
wangdp123
▴ 340
0
votes
1
reply
2.5k
views
Comment:
C: Draw the phylogeny from RNA-Seq data
6.7 years ago by
wangdp123
▴ 340
1
vote
2
replies
1.2k
views
How to understand "between_species_paralog" in Ensembl and EnsemblGenomes
Ensembl
paralogs
EnsemblGenomes
updated 6.8 years ago by
Emily
23k • written 6.8 years ago by
wangdp123
▴ 340
1
vote
1
reply
4.8k
views
How to rank genes prepared for GSEA analysis with TopGO
TopGO
GSEA
RNA-Seq
updated 6.8 years ago by
BioinfGuru
★ 1.7k • written 6.8 years ago by
wangdp123
▴ 340
0
votes
1
reply
1.9k
views
Comment:
C: Generate syntenic blocks between two vertebrates
6.8 years ago by
wangdp123
▴ 340
0
votes
1
reply
1.9k
views
How to obtain more GO terms for transcripts
Gene ontology
de novo assembly
updated 6.8 years ago by
Whoknows
▴ 960 • written 6.8 years ago by
wangdp123
▴ 340
4
votes
11
replies
3.9k
views
Software for GO enrichment based on own DEGs and GO annotation.
GO
enrichment
updated 6.9 years ago by
mforde84
★ 1.4k • written 6.9 years ago by
wangdp123
▴ 340
0
votes
1
reply
3.9k
views
Comment:
C: Software for GO enrichment based on own DEGs and GO annotation.
6.9 years ago by
wangdp123
▴ 340
0
votes
1
reply
2.3k
views
Comment:
C: Bulky collection of the orthologs and paralogs data from Ensembl
6.9 years ago by
wangdp123
▴ 340
2
votes
4
replies
2.3k
views
Bulky collection of the orthologs and paralogs data from Ensembl
orthologs
paralogs
ensembl
6.9 years ago by
wangdp123
▴ 340
1
vote
2
replies
1.9k
views
The installation of KissDE
SNP
kissplice
updated 6.9 years ago by
vincent.lacroix
▴ 150 • written 7.0 years ago by
wangdp123
▴ 340
1
vote
2
replies
2.4k
views
orthomclInstallSchema issue in OrthoMCL program
OrthoMCL
6.9 years ago by
wangdp123
▴ 340
5
votes
7
replies
1.8k
views
6 follow
Free space hosting online bioinformatics databases
database
6.9 years ago by
wangdp123
▴ 340
0
votes
2
replies
1.8k
views
Comment:
C: Free space hosting online database
6.9 years ago by
wangdp123
▴ 340
0
votes
0
replies
1.0k
views
Comment:
C: blastp changed the "|" into ":" in the sequence identifier in the second column
7.0 years ago by
wangdp123
▴ 340
0
votes
2
replies
1.0k
views
blastp changed the "|" into ":" in the sequence identifier in the second column of the blastp result
blast+
updated 7.0 years ago by
GenoMax
141k • written 7.0 years ago by
wangdp123
▴ 340
0
votes
1
reply
2.7k
views
Comment:
C: Interproscan get stuck in "90% completed"
7.0 years ago by
wangdp123
▴ 340
0
votes
1
reply
2.7k
views
Comment:
C: Interproscan get stuck in "90% completed"
7.0 years ago by
wangdp123
▴ 340
1
vote
9
replies
2.7k
views
Interproscan get stuck in "90% completed"
interproscan
annotation
protein
7.0 years ago by
wangdp123
▴ 340
0
votes
2
replies
1.9k
views
kissplice on TWAS analysis
RNA-Seq
snp
next-gen
kissplice
updated 7.1 years ago by
leandro.ishi.lima
▴ 90 • written 7.1 years ago by
wangdp123
▴ 340
3
votes
1
reply
2.3k
views
Tool:
hppRNA: a Snakemake-based handy parameter-free pipeline for RNA-Seq analysis of numerous samples
sequence
R
genome
snp
RNA-Seq
updated 9 months ago by
Ram
43k • written 7.2 years ago by
wangdp123
▴ 340
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