User: Iarwain

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Iarwain0
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Posts by Iarwain

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What is the difference between the original Mauve and progressiveMauve
... Hi everybody, I was wondering what the difference between the original Mauve algorithm and progressiveMauve is. The [official website][1] states that the difference will be explained in "a later section" but I can't find it. When I want to align my genomes with original Mauve in the GUI version, ...
progressivemauve mauve written 2.3 years ago by Iarwain0 • updated 2.3 years ago by natasha.sernova3.1k
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Mauve - Trouble understanding the .islands file
... Hi everybody, For my project I'm comparing the genomes of an outbreak strain with strains from it's own species. My goal is to identify possible unique regions in the outbreak strain. I use Mauve to compare the genomes. As I read the Mauve official website, the *.islands* file (among the output f ...
mauve output written 2.3 years ago by Iarwain0
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Comment: C: Comparing genomes - finding larger missing/extra sequences
... Thank you very much. However, I'm fairly new to the subject and don't fully understand the concept of breakpoints. What are those exactly? The end of hits made with Smith-Waterman? ...
written 2.4 years ago by Iarwain0
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Comparing genomes - finding larger missing/extra sequences
... I'm comparing NGS data from whole genome sequencing. The genomes come from bacteria which caused an outbreak and one or more "normal" strains from the same species. The department I work for would like to see if there are regions of DNA that differ. However, finding SNPs and indels are not useful t ...
genome next-gen tool written 2.4 years ago by Iarwain0 • updated 2.4 years ago by 5heikki7.9k
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BRIG output explanation
... Hi everybody, I have a question about BRIG (BLAST Ring Image Generator); the software that let's you compare genomes. I don't fully understand all the output it creates. The image and the CGview XML I understand but the rest I don't get. I tried the official website and contacting the maker direct ...
output blast brig written 2.8 years ago by Iarwain0 • updated 2.6 years ago by Biostar ♦♦ 20

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