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2
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10k
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Answer: A: Reformat minimac imputated files to plink file
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.3k
8
votes
1
reply
22k
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Answer: A: Accounting for problem SNPS when merging multiple plink files
updated 4.3 years ago by 43k • written 9.9 years ago by ★ 2.3k
0
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0
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2.7k
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Answer: A: PLINK ERROR: ERROR: --ld-snp {marker} not found
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 2.3k
0
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0
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2.9k
views
Answer: A: functional analysis of intronic and neargene SNPs
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 2.3k
4
votes
1
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17k
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Answer: A: Converting Between Impute2 And Ped/Map After Imputation - 1St Column Dashes Prob
updated 4.3 years ago by 43k • written 12.1 years ago by ★ 2.3k
2
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0
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12k
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Answer: A: Flip Gwas Data To Positive Strand (Hg19 Build 37)
updated 4.3 years ago by 43k • written 10.0 years ago by ★ 2.3k
5
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2
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15k
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Answer: A: How To Extract Random Snps From Whole Genome Data?
updated 4.7 years ago by 43k • written 12.3 years ago by ★ 2.3k
1
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0
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34k
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Answer: A: Bioinformatic Cartoon
updated 5.4 years ago by 81k • written 10.2 years ago by ★ 2.3k
6
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2
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3.2k
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Answer: A: What does people do with the probes that doesn't have any GENE SYMBOL in annotat
6.4 years ago by Maxime Lamontagne ★ 2.3k
0
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0
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1.7k
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Answer: A: literature review by a web server
6.5 years ago by Maxime Lamontagne ★ 2.3k
0
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0
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3.4k
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Answer: A: logistic regression with PLINK
6.5 years ago by Maxime Lamontagne ★ 2.3k
1
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2
replies
5.4k
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Answer: A: Using Plink, get allele frequencies for a subset of individuals
6.6 years ago by Maxime Lamontagne ★ 2.3k
1
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0
replies
11k
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Answer: A: Convert SNPs from GrCh38 to 37
6.6 years ago by Maxime Lamontagne ★ 2.3k
1
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0
replies
1.7k
views
Answer: A: How to get a unique target gene for each SNP from different chromosomes/genes in
6.7 years ago by Maxime Lamontagne ★ 2.3k
2
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2
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4.1k
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Answer: A: ANNOVAR - column description
6.7 years ago by Maxime Lamontagne ★ 2.3k
1
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1
reply
2.0k
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Answer: A: Feasible Annotation of 4 million unique SNPs
6.8 years ago by Maxime Lamontagne ★ 2.3k
3
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0
replies
4.6k
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Answer: A: How to make bed file for existing bim and fam file
6.9 years ago by Maxime Lamontagne ★ 2.3k
0
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1
reply
5.2k
views
Answer: A: Grep Position List
updated 6.9 years ago by 47k • written 6.9 years ago by ★ 2.3k
0
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0
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9.3k
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Answer: A: Merge ped files in PLINK
7.2 years ago by Maxime Lamontagne ★ 2.3k
1
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1
reply
2.0k
views
Answer: A: Calculate pairwise LD for two given genomic loci (not rsIDs)?
7.2 years ago by Maxime Lamontagne ★ 2.3k
2
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1
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6.3k
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Answer: A: Plink --freq case-control output format
8.0 years ago by Maxime Lamontagne ★ 2.3k
0
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1
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6.8k
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Answer: Answer: Trouble with PLINK's logistic regression analysis and covariates
updated 21 months ago by 43k • written 8.2 years ago by ★ 2.3k
0
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0
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9.2k
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Answer: A: PLINK --update-name command error due to multiple SNPs with same chr:pos but dif
8.3 years ago by Maxime Lamontagne ★ 2.3k
2
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1
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2.6k
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Answer: Answer: MAF in QC of genetic association study
updated 23 months ago by 43k • written 8.3 years ago by ★ 2.3k
0
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0
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2.5k
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Answer: Answer: How to find annotation file version from CDF file
updated 20 months ago by 43k • written 8.4 years ago by ★ 2.3k
3
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1
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4.4k
views
Answer: A: How to tell Plink to merge based on Hg19 coordinates, not based on SNP ID
8.7 years ago by Maxime Lamontagne ★ 2.3k
2
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1
reply
7.4k
views
Answer: Answer: PLINK: Change affection status
updated 16 months ago by 43k • written 8.8 years ago by ★ 2.3k
9
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2
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18k
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Answer: Answer: What does the MAF/MinorAlleleCount mean?
updated 16 months ago by 43k • written 8.8 years ago by ★ 2.3k
3
votes
0
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4.4k
views
Answer: A: Plink MAF Calculation
9.1 years ago by Maxime Lamontagne ★ 2.3k
1
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1
reply
3.6k
views
Answer: Answer: PLINK analysis for case/control studies
updated 2.0 years ago by 43k • written 9.2 years ago by ★ 2.3k
0
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0
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4.4k
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Answer: Answer: Differentially expressed genes in Microarray data by Wilcoxon-test
updated 2.1 years ago by 43k • written 9.3 years ago by ★ 2.3k
0
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2
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4.4k
views
Answer: Answer: Differentially expressed genes in Microarray data by Wilcoxon-test
updated 2.1 years ago by 43k • written 9.4 years ago by ★ 2.3k
1
vote
0
replies
4.9k
views
Answer: Answer: How to get list of GeneIDs using SNP ID list?
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.3k
26
votes
1
reply
69k
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Answer: Answer: Minor allele frequency calculation
updated 2.2 years ago by 43k • written 9.4 years ago by ★ 2.3k
0
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0
replies
1.9k
views
Answer: Answer: Minor allele frequency and damaging prediction
updated 2.3 years ago by 43k • written 9.6 years ago by ★ 2.3k
1
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1
reply
3.1k
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Answer: A: Convert Impute2 phased output files to mach format
9.6 years ago by Maxime Lamontagne ★ 2.3k
0
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0
replies
4.6k
views
Answer: Answer: Problem while merging two .ped files.
updated 2.3 years ago by 43k • written 9.7 years ago by ★ 2.3k
0
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0
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3.3k
views
Answer: A: Custom exome array chip with 527 SNPs have chromosome information with 0
9.8 years ago by Maxime Lamontagne ★ 2.3k
0
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0
replies
2.0k
views
Answer: Answer: how to select candidate genes after resequencing
updated 2.5 years ago by 43k • written 9.8 years ago by ★ 2.3k
2
votes
0
replies
3.9k
views
Answer: Answer: State of the art GWAS tools
updated 3.0 years ago by 43k • written 9.9 years ago by ★ 2.3k
3
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1
reply
7.4k
views
Answer: A: Plink Problem Reading The Covariate File
10.9 years ago by Maxime Lamontagne ★ 2.3k
5
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1
reply
3.1k
views
Answer: A: Snp Information From Ped File In Plink
11.1 years ago by Maxime Lamontagne ★ 2.3k
0
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0
replies
7.2k
views
Answer: A: How To Combine P-Values Obtained With Different Approaches?
11.4 years ago by Maxime Lamontagne ★ 2.3k
1
vote
0
replies
5.4k
views
Answer: A: How To Calculate The Genomic Inflation Factor From The Plink Output?
11.6 years ago by Maxime Lamontagne ★ 2.3k
0
votes
0
replies
2.4k
views
Answer: A: Automatic Ld Plot For Multiples Snps On Different Chromosome
11.7 years ago by Maxime Lamontagne ★ 2.3k
1
vote
1
reply
3.7k
views
Answer: A: Representing A Feature Along The Length Of The Chromosome
11.8 years ago by Maxime Lamontagne ★ 2.3k
0
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1
reply
4.8k
views
Answer: A: Job Postings
11.8 years ago by Maxime Lamontagne ★ 2.3k
1
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0
replies
3.5k
views
Answer: A: Where Can I Find Sample Population Mapping Files For 1000G Data?
11.8 years ago by Maxime Lamontagne ★ 2.3k
0
votes
0
replies
10k
views
Answer: A: How Can I Make An Ld Plot Of My Region Of Interest Using 1000 Genomes Data?
11.8 years ago by Maxime Lamontagne ★ 2.3k
3
votes
0
replies
22k
views
Answer: A: Make Ped And Map File For Plink Anlysis
11.8 years ago by Maxime Lamontagne ★ 2.3k
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