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3
votes
4
replies
994
views
format the gtf file
gtf
updated 13 months ago by 43k • written 2.1 years ago by ▴ 50
1
vote
3
replies
985
views
change the attribute order on a gtf file
gtf
updated 13 months ago by 43k • written 2.1 years ago by ▴ 50
3
votes
3
replies
2.2k
views
How to change the default P value and FDR cutoff in DiffBind
ChIP-Seq R
updated 2.1 years ago by ▴ 250 • written 3.8 years ago by ▴ 50
0
votes
0
replies
300
views
scATAC low fragments quality
scATAC-seq single-cell
updated 10 months ago by 43k • written 2.2 years ago by ▴ 50
7
votes
6
replies
1.3k
views
Never use bowtie2 for mapping?
RNAseq
updated 2.2 years ago by ★ 5.8k • written 2.2 years ago by ▴ 50
3
votes
3
replies
1.2k
views
Remove the intron peaks from the genome browser
RNAseq
updated 2.3 years ago by 11k • written 2.3 years ago by ▴ 50
1
vote
7
replies
1.4k
views
How to statistically test the separation of two clusters in PCA
ChIP-Seq DiffBind
updated 3.3 years ago by 35k • written 3.3 years ago by ▴ 50
1
vote
6
replies
982
views
Exceptionally high peak/reads in ATACseq bam and peak files
sequencing
updated 3.9 years ago by 19k • written 3.9 years ago by ▴ 50
0
votes
0
replies
753
views
The feature distribution of genome itself on chip-seeker
ChIP-Seq
4.6 years ago by bright602 ▴ 50
3
votes
1
reply
914
views
How to replace the "." in a table with "0"
next-gen sequence
updated 6.2 years ago by 81k • written 6.2 years ago by ▴ 50
0
votes
3
replies
1.6k
views
error with makeTxDbFromBiomart
R
updated 6.2 years ago by 141k • written 6.2 years ago by ▴ 50
4
votes
7
replies
2.8k
views
why all the reads in fastq files have the same quality value?
RNA-Seq sequence sequencing
updated 6.8 years ago by 104k • written 6.8 years ago by ▴ 50
2
votes
1
reply
927
views
How to separate read 1 and read 2 in a bed file?
genome sequence
updated 7.7 years ago by 141k • written 7.7 years ago by ▴ 50
11
votes
10
replies
13k
views
6 follow
How to remove the header line with ">" in a fasta file
sequencing genome
updated 7.8 years ago by 141k • written 7.8 years ago by ▴ 50
1
vote
3
replies
1.9k
views
How to remove the same genome coordinate in two bed files?
next-gen genome R sequencing
updated 7.8 years ago by ▴ 140 • written 7.8 years ago by ▴ 50
1
vote
5
replies
1.2k
views
How to subset the fasta sequence starting with "G"?
genome sequence
updated 7.9 years ago by ★ 4.0k • written 7.9 years ago by ▴ 50
0
votes
1
reply
1.3k
views
How to know the genome coordinate of DNaseI hypersensitive sites large peaks?
genome sequence next-gen
updated 7.9 years ago by ▴ 70 • written 7.9 years ago by ▴ 50
1
vote
0
replies
1.6k
views
SNPs location in DNase I hypersensitive sites, whether its in the middle or tail of DHS sites
SNP
7.9 years ago by bright602 ▴ 50
9
votes
6
replies
1.4k
views
How to remove the last character "," from each row in bed file?
Assembly sequencing
updated 8.0 years ago by 7.5k • written 8.0 years ago by ▴ 50
12
votes
8
replies
3.2k
views
How to add a new column with consecutive integer number in a bed file?
R gene
updated 8.0 years ago by 11k • written 8.0 years ago by ▴ 50
3
votes
8
replies
2.6k
views
How to use fastools digest function to cut the positive strand of DNA exclusively?
gene sequence
updated 12 months ago by 43k • written 8.1 years ago by ▴ 50
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