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2
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34k
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Comment: Comment: TCGA: Does TCGA cancer studies have mRNA expression data for Control/Normal samp
updated 4.6 years ago by 45k • written 9.3 years ago by 11k
2
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1
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5.2k
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Answer: A: How to calculate q value in rna-seq data?
9.3 years ago by Nicolas Rosewick 11k
2
votes
2
replies
4.5k
views
Tophat Parameters Misunderstanding
tophat
updated 9.3 years ago by 20 • written 13.7 years ago by 11k
11
votes
3
replies
14k
views
featureCounts exon counting problem
exon featurecounts
updated 4.6 years ago by 45k • written 10.4 years ago by 11k
0
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0
replies
1.5k
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Comment: C: Getting a list of genes expressed
9.3 years ago by Nicolas Rosewick 11k
0
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0
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3.0k
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Comment: C: Model scripts for R bioinformatics research
9.3 years ago by Nicolas Rosewick 11k
0
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1
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7.2k
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Comment: C: Heatmap vs Volcano Plot
9.3 years ago by Nicolas Rosewick 11k
0
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1
reply
2.6k
views
How to check the expression of a specific gene across all TCGA samples
TCGA gene expression
updated 9.4 years ago by ★ 1.9k • written 9.4 years ago by 11k
9
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0
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10k
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Answer: A: Any materials explaining BWA and Bowtie algorithm?
9.4 years ago by Nicolas Rosewick 11k
2
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5
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2.5k
views
What is the genic size (exon+intron) of a genome
gene genome
updated 9.4 years ago by ★ 3.2k • written 9.4 years ago by 11k
1
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2
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4.3k
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Comment: C: An easy way to find appropriated tools : OMIC-tools
9.4 years ago by Nicolas Rosewick 11k
5
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1
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5.2k
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Answer: A: How to get nucleotide sequences for a given list of genomic positions.
9.4 years ago by Nicolas Rosewick 11k
0
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1
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3.1k
views
Comment: C: Is cor() enough to tell about relations between genes?
9.4 years ago by Nicolas Rosewick 11k
2
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2
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3.1k
views
Comment: C: Is cor() enough to tell about relations between genes?
9.4 years ago by Nicolas Rosewick 11k
0
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1
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3.1k
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Comment: C: Is cor() enough to tell about relations between genes?
9.4 years ago by Nicolas Rosewick 11k
0
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1
reply
3.1k
views
Comment: C: Is cor() enough to tell about relations between genes?
9.4 years ago by Nicolas Rosewick 11k
0
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1
reply
2.8k
views
Comment: C: filtering the rows in R
9.5 years ago by Nicolas Rosewick 11k
0
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1
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8.3k
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Comment: C: R stat heatmap problem
9.5 years ago by Nicolas Rosewick 11k
0
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0
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33k
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Comment: C: Volcano plot p-value or FDR?
9.5 years ago by Nicolas Rosewick 11k
0
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0
replies
3.6k
views
Gviz : fill and line arrow color issues
gviz
9.6 years ago by Nicolas Rosewick 11k
1
vote
1
reply
2.8k
views
Remove low-complexity region from bed file
low complexity bed
9.6 years ago by Nicolas Rosewick 11k
0
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0
replies
3.3k
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Comment: C: Counting reads within regions of interest
9.6 years ago by Nicolas Rosewick 11k
0
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1
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3.3k
views
Answer: A: Counting reads within regions of interest
9.6 years ago by Nicolas Rosewick 11k
2
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1
reply
2.1k
views
How to list genomic regions that are close in a 3D conformation manner using Hi-C data ?
Hi-C
updated 9.7 years ago by ▴ 280 • written 9.7 years ago by 11k
0
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1
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5.8k
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Comment: C: Is reference genome same for DNA and RNA sequence alignment
9.7 years ago by Nicolas Rosewick 11k
2
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1
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5.8k
views
Comment: C: Is reference genome same for DNA and RNA sequence alignment
9.7 years ago by Nicolas Rosewick 11k
1
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0
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5.8k
views
Comment: C: Is reference genome same for DNA and RNA sequence alignment
9.7 years ago by Nicolas Rosewick 11k
0
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0
replies
1.8k
views
Comment: C: Compute test-score statistical significance using control-scores from shuffled p
9.7 years ago by Nicolas Rosewick 11k
0
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0
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2.1k
views
Comment: C: IGV: Load custom data (chr, start, end, strand, sample)
9.7 years ago by Nicolas Rosewick 11k
0
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2
replies
2.1k
views
IGV: Load custom data (chr, start, end, strand, sample)
IGV
updated 9.7 years ago by 15k • written 9.7 years ago by 11k
0
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0
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3.6k
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Comment: C: I loaded a DNA-seq BAM file in IGV but I can't see anything
9.7 years ago by Nicolas Rosewick 11k
3
votes
2
replies
2.0k
views
450K complex design
450K
updated 3.3 years ago by 45k • written 10.0 years ago by 11k
0
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0
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1.8k
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Comment: C: Can a lack of exome coverage disproportionately call snRNAs as significantly cha
9.7 years ago by Nicolas Rosewick 11k
1
vote
9
replies
3.0k
views
7 follow
Are these reads all PCR replicates ?
dna-seq
updated 9.7 years ago by ▴ 700 • written 9.7 years ago by 11k
1
vote
1
reply
2.0k
views
Comment: C: unexpect results from p.adjust?
9.7 years ago by Nicolas Rosewick 11k
0
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1
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3.0k
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Comment: C: Are these reads all PCR replicates ?
9.7 years ago by Nicolas Rosewick 11k
0
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0
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3.0k
views
Comment: C: Are these reads all PCR replicates ?
9.7 years ago by Nicolas Rosewick 11k
0
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1
reply
8.6k
views
Comment: Comment: RNA-STAR, mapping problem (number of reads)
updated 3.4 years ago by 45k • written 9.7 years ago by 11k
0
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1
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8.6k
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Comment: C: RNA-STAR, mapping problem (number of reads)
9.7 years ago by Nicolas Rosewick 11k
0
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0
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3.8k
views
Comment: C: Aligning reads to genome together with transcriptome
9.7 years ago by Nicolas Rosewick 11k
0
votes
0
replies
21k
views
Comment: Comment: how to use log transformation with read count data?
updated 4.6 years ago by 45k • written 9.8 years ago by 11k
1
vote
0
replies
1.5k
views
Align HTS on microsatellite
microsatellite DNA-Seq
updated 3.3 years ago by 45k • written 9.8 years ago by 11k
14
votes
13
replies
16k
views
11 follow
Visualize Strand-Specific Rna-Seq : How To Differentiate Strands
rna-seq visualization strand
updated 9.8 years ago by ▴ 130 • written 12.8 years ago by 11k
1
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0
replies
2.4k
views
Comment: C: Identify miRNA from deep RNA sequencing
9.8 years ago by Nicolas Rosewick 11k
3
votes
2
replies
6.7k
views
Tophat: How Many Allowed Mismatch ?
tophat
updated 9.9 years ago by 20 • written 13.7 years ago by 11k
0
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0
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9.0k
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Comment: C: How to TMM after HTSeq-count?
9.9 years ago by Nicolas Rosewick 11k
0
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0
replies
2.2k
views
Comment: C: [BIOINFORMATICS?] Compare two methods
9.9 years ago by Nicolas Rosewick 11k
0
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1
reply
3.5k
views
Comment: C: qRT-PCR analysis : average triplicates for statistical testing
9.9 years ago by Nicolas Rosewick 11k
0
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1
reply
3.5k
views
Comment: C: qRT-PCR analysis : average triplicates for statistical testing
9.9 years ago by Nicolas Rosewick 11k
0
votes
4
replies
3.5k
views
qRT-PCR analysis : average triplicates for statistical testing
qrt-pcr replicates statistics
updated 3.3 years ago by 45k • written 9.9 years ago by 11k
1,080 results • Page 13 of 22
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