User: cypridina

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cypridina0
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Posts by cypridina

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Comment: C: Selecting Random Pairs From Fastq?
... It sounds like you're passing in a file that has interleaved reads. Is that true? In that case, you might get randomly get a forward and reverse pair right next to each other. If so, you need to use seqtk on both the forward and reverse files independently, then interleave them. ...
written 16 months ago by cypridina0
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Answer: A: Downloading And Maintaining A Local, Blast-Able Nr Database
... I made a script that checks if there is a blast job currently running, waits until it is done, deletes the old dbs, then downloads the new ones and moves them into the same directory name. The script outputs everything into a dated log for archival purposes. Anyone have any suggestions for improveme ...
written 16 months ago by cypridina0
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Comment: C: Converting Sam To Bam
... I think this was in reference to the possibility of stderr also directing to the output file when ">" instead of "-o" is used. Found something about it here: https://sourceforge.net/p/bio-bwa/mailman/message/32092344/ Not sure if it's still a problem though! ...
written 20 months ago by cypridina0

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