User: Andreas

gravatar for Andreas
Andreas2.4k
Reputation:
2,390
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Trusted
Location:
Singapore
Website:
http://www.andreas-wil...
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Google Scholar Page
Last seen:
1 year, 2 months ago
Joined:
8 years, 7 months ago
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Posts by Andreas

<prev • 172 results • page 1 of 18 • next >
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Comment: C: Indexing Compressed Fastq-Like Data
... would anyone know where that blog post is hosted these days? ...
written 20 months ago by Andreas2.4k
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Answer: A: Extracting annotation values from vcf files for plotting distribution
... Another tools to extract values from a vcf file: vcf_get_val.py (requires pyvcf)   Andreas ...
written 2.9 years ago by Andreas2.4k
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Answer: A: reorder contigs given by nucmer
... Hi,   I'm a bit late to the party but: Mummer's show-tiling does the trick. It can also generate a concatenated pseudo-sequence (gaps filled with Ns) if you use option -p   Andreas   ...
written 3.0 years ago by Andreas2.4k
1
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Answer: A: Split Fastq Files Into Chunks Of 1M Reads
... For the sake of completeness: the latest version of famas (commit 04ed15e) can do this as well. The split is based on number of reads though and not file size.   Andreas ...
written 3.2 years ago by Andreas2.4k
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Answer: A: list of dockerized bioinformatics apps
... LoFreq - https://registry.hub.docker.com/u/andreaswilm/lofreq/ ...
written 3.6 years ago by Andreas2.4k
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Comment: C: Circos Histogram Bam File
... Note that samtools mpileup has a default coverage cap at 800 (I think) ...
written 3.8 years ago by Andreas2.4k
1
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Answer: A: Merge Paired-End Reads
... One more: SeqPrep Andreas ...
written 3.8 years ago by Andreas2.4k
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Comment: C: How to support bioinformatics tools via Biostars: prefill and watch tags, reply
... New link http://gmt.genome.wustl.edu/packages/pindel/ ...
written 3.8 years ago by Andreas2.4k
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Comment: C: Download Clustal Omega on Mac OS
... Please clarify whether you want to compile Clustal Omega or just use it. The download link you provided is for the binary.   PS: OP changed link to source code ...
written 3.9 years ago by Andreas2.4k
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Answer: A: Download Clustal Omega on Mac OS
... The link you used is for the ClustalO executable file. There's no need to run configure or install anything. From the Clustal website: "UNIX and Mac users should rename the downloaded file to clustalo and place in the location of their choice. This file may need to be made executable e.g.: chmod u+x ...
written 3.9 years ago by Andreas2.4k

Latest awards to Andreas

Good Answer 17 months ago, created an answer that was upvoted at least 5 times. For A: Using Bwa And Samtools Together
Good Answer 2.3 years ago, created an answer that was upvoted at least 5 times. For A: Using Bwa And Samtools Together
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Meaning of Base Alignment Quality (BAQ) 0
Appreciated 2.3 years ago, created a post with more than 5 votes. For A: Using Bwa And Samtools Together
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For A: Parallelized Version Of Clustalw?
Scholar 4.5 years ago, created an answer that has been accepted. For A: Using Pysam to extract paired reads
Teacher 4.5 years ago, created an answer with at least 3 up-votes. For A: Sequence Viewer & Editor
Teacher 4.5 years ago, created an answer with at least 3 up-votes. For A: Sequence Viewer & Editor
Teacher 4.5 years ago, created an answer with at least 3 up-votes. For A: Sequence Viewer & Editor
Appreciated 4.7 years ago, created a post with more than 5 votes. For A: Tool To Generate Proportional Venn Diagrams?
Supporter 4.7 years ago, voted at least 25 times.
Appreciated 4.7 years ago, created a post with more than 5 votes. For A: Using Bwa And Samtools Together
Appreciated 4.7 years ago, created a post with more than 5 votes. For A: Best Blast Hit Without Pain
Appreciated 4.7 years ago, created a post with more than 5 votes. For A: Samtools Pileup Characters
Centurion 4.7 years ago, created 100 posts.
Guru 4.7 years ago, received more than 100 upvotes.
Good Answer 4.7 years ago, created an answer that was upvoted at least 5 times. For A: Which Is The Most Accurate Method To Align Multiple Nucleotide Sequences Without
Good Answer 4.7 years ago, created an answer that was upvoted at least 5 times. For A: Using Bwa And Samtools Together
Voter 4.7 years ago, voted more than 100 times.
Commentator 4.7 years ago, created a comment with at least 3 up-votes. For C: Problem Running Clustalomegacommandline
Appreciated 4.7 years ago, created a post with more than 5 votes. For C: Bam File: Which Column Change When We Flag The Duplicate Reads

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