User: Andreas
Andreas • 2.4k
- Reputation:
- 2,400
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- Location:
- Singapore
- Website:
- http://www.andreas-wil...
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- Google Scholar Page
- Last seen:
- 1 year, 9 months ago
- Joined:
- 9 years, 3 months ago
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Posts by Andreas
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0
votes
7
answers
4.5k
views
7
answers
... Would anyone know where that blog post is hosted these days? ...
1
vote
3
answers
2.8k
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3
answers
... Another tools to extract values from a vcf file: vcf_get_val.py (requires pyvcf)
Andreas
...
written 3.5 years ago by
Andreas • 2.4k
1
vote
2
answers
2.9k
views
2
answers
... Hi,
I'm a bit late to the party but:
Mummer's show-tiling does the trick. It can also generate a concatenated pseudo-sequence (gaps filled with Ns) if you use option -p
Andreas
...
written 3.6 years ago by
Andreas • 2.4k
1
vote
5
answers
18k
views
5
answers
... For the sake of completeness: the latest version of famas (commit 04ed15e) can do this as well. The split is based on number of reads though and not file size.
Andreas
...
written 3.8 years ago by
Andreas • 2.4k
1
vote
2
answers
6.1k
views
2
answers
...
LoFreq - https://registry.hub.docker.com/u/andreaswilm/lofreq/
...
written 4.2 years ago by
Andreas • 2.4k
0
votes
3
answers
7.7k
views
3
answers
Comment:
C: Circos Histogram Bam File
... Note that samtools mpileup has a default coverage cap at 800 (I think)
...
written 4.4 years ago by
Andreas • 2.4k
1
vote
7
answers
22k
views
7
answers
Answer:
A: Merge Paired-End Reads
... One more: SeqPrep
Andreas
...
written 4.4 years ago by
Andreas • 2.4k
0
votes
2
answers
6.0k
views
2
answers
... New link http://gmt.genome.wustl.edu/packages/pindel/
...
written 4.4 years ago by
Andreas • 2.4k
0
votes
3
answers
7.5k
views
3
answers
Comment:
C: Download Clustal Omega on Mac OS
... Please clarify whether you want to compile Clustal Omega or just use it. The download link you provided is for the binary.
PS: OP changed link to source code
...
written 4.5 years ago by
Andreas • 2.4k
1
vote
3
answers
7.5k
views
3
answers
... The link you used is for the ClustalO executable file. There's no need to run configure or install anything. From the Clustal website: "UNIX and Mac users should rename the downloaded file to clustalo and place in the location of their choice. This file may need to be made executable e.g.: chmod u+x ...
written 4.5 years ago by
Andreas • 2.4k
Latest awards to Andreas
Good Answer
2.0 years ago,
created an answer that was upvoted at least 5 times.
For A: Using Bwa And Samtools Together
Good Answer
2.9 years ago,
created an answer that was upvoted at least 5 times.
For A: Using Bwa And Samtools Together
Popular Question
2.9 years ago,
created a question with more than 1,000 views.
For Meaning of Base Alignment Quality (BAQ) 0
Appreciated
2.9 years ago,
created a post with more than 5 votes.
For A: Using Bwa And Samtools Together
Teacher
3.3 years ago,
created an answer with at least 3 up-votes.
For A: Parallelized Version Of Clustalw?
Popular Question
5.0 years ago,
created a question with more than 1,000 views.
For Lofreq: A Fast And Sensitive Variant-Caller For Inferring Single-Nucleotide Variants From Ngs Data
Scholar
5.1 years ago,
created an answer that has been accepted.
For A: Using Pysam to extract paired reads
Appreciated
5.3 years ago,
created a post with more than 5 votes.
For A: Tool To Generate Proportional Venn Diagrams?
Supporter
5.3 years ago,
voted at least 25 times.
Appreciated
5.3 years ago,
created a post with more than 5 votes.
For A: Using Bwa And Samtools Together
Appreciated
5.3 years ago,
created a post with more than 5 votes.
For A: Best Blast Hit Without Pain
Centurion
5.3 years ago,
created 100 posts.
Guru
5.3 years ago,
received more than 100 upvotes.
Popular Question
5.3 years ago,
created a question with more than 1,000 views.
For Lofreq: A Fast And Sensitive Variant-Caller For Inferring Single-Nucleotide Variants From Ngs Data
Good Answer
5.3 years ago,
created an answer that was upvoted at least 5 times.
For A: Which Is The Most Accurate Method To Align Multiple Nucleotide Sequences Without
Good Answer
5.3 years ago,
created an answer that was upvoted at least 5 times.
For A: Using Bwa And Samtools Together
Appreciated
5.3 years ago,
created a post with more than 5 votes.
For Lofreq: A Fast And Sensitive Variant-Caller For Inferring Single-Nucleotide Variants From Ngs Data
Voter
5.3 years ago,
voted more than 100 times.
Appreciated
5.3 years ago,
created a post with more than 5 votes.
For A: Which Is The Most Accurate Method To Align Multiple Nucleotide Sequences Without
Commentator
5.3 years ago,
created a comment with at least 3 up-votes.
For C: Problem Running Clustalomegacommandline
Appreciated
5.3 years ago,
created a post with more than 5 votes.
For C: Bam File: Which Column Change When We Flag The Duplicate Reads
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