User: jye

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jye10
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3 years, 4 months ago
Joined:
3 years, 5 months ago
Email:
j**@broadinstitute.org

Posts by jye

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Finding specific k-mer in human genome
... Thank you. Good to know. ...
written 3.4 years ago by jye10
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Comment: C: Finding specific k-mer in human genome
... That's a great tool. Solved my problem! Thank you! ...
written 3.4 years ago by jye10
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Comment: C: Finding specific k-mer in human genome
... Yes. That's what I want to do ...
written 3.4 years ago by jye10
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Finding specific k-mer in human genome
... I want to find a specific 9-mer (GATCGATGC) in human genome, and then export them into a bed file with all information including chromosome, start and end position. A lot of tools such as jellyfish and DSK can only count k mer occurrence and can't export k mer information. Does anybody know how to d ...
k-mer bed list all coordinates written 3.4 years ago by jye10 • updated 3.4 years ago by Alex Reynolds28k
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how to extract all signal value from chip seq data for a particular k-mer
... I want to find a particular 8 mer from a chip-seq data (e.g. coordinates) and their associated signal value. I want to use this information to compare binding affinity of each 8 mer for that transcription factor. Any suggestion would be greatly appreciated ...
k mer chip-seq written 3.4 years ago by jye10

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