User: Tim D

gravatar for Tim D
Tim D50
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50
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New User
Location:
Belgium, Leuven
Last seen:
1 year ago
Joined:
3 years, 2 months ago
Email:
t**********@kuleuven.be

Posts by Tim D

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Comment: C: Paired and Multivariate sleuth
... Alas, no. I tried several things, like explicitly including the intercept in the full model, which in R usually prevents the first factor level from becoming the baseline, but that doesn't seem to work here. In the end, I releveled the factor to get the comparisons that I wanted and just estimated ...
written 12 months ago by Tim D50
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Paired and Multivariate sleuth
... The sleuth example workflows generally have experimental designs of unpaired data with only 2 experimental conditions. so <- sleuth_prep(s2c, ~ treatment) so <- sleuth_fit(so) so <- sleuth_fit(so, ~1, 'reduced') so <- sleuth_lrt(so, 'reduced', 'full') Ensuring that fitted models a ...
R sleuth kallisto rna-seq written 22 months ago by Tim D50 • updated 12 months ago by samantha_jeschonek50
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Answer: A: Tool to Visualize a list of GO- or InterPro-Terms
... I'm not sure I understand what exactly you're after. If you are trying to visualize different GO classifications and their relation to one another, you could look at [GOView][1]. [1]: http://www.webgestalt.org/GOView/ ...
written 3.2 years ago by Tim D50
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GEO Illumina HumanHT-12 V3.0 Series never include Raw Data?
... While gathering up data for a microarray meta analysis, I came across something odd. I hope I'm just being stupid and that I'm missing something blindingly obvious. The GSE I'm looking at (GSE29312) was created using the Illumina HumanHT-12 V3.0 expression beadchip (GPL6947). Because I cannot with ...
geo microarray written 3.2 years ago by Tim D50

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