User: maxnest

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maxnest10
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14 hours ago
Joined:
2 years, 11 months ago
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m***************@gmail.com

Posts by maxnest

<prev • 6 results • page 1 of 1 • next >
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Comment: A: RATT annotation transfer tool usage.
... Dear Mehmet, Could you tell us, have you finished manual for RATT? Unfortunately, i have some problems with RATT usage. Thanks ...
written 26 days ago by maxnest10
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Comment: A: GenomeScope analysis failed
... Dear colleagues, I am very grateful to you for the answers. Thank you so much for Kraken and BlobTools, this is exactly what I wanted to find. ...
written 3 months ago by maxnest10
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GenomeScope analysis failed
... Dear colleagues I was provided with sequencing data of a single protist genome. I used Jellyfish (-k 21 -m 35M) on the Trimmomatic libraries to estimate the approximate genome size. However, the analysis with the help of GenomeScope failed, and I get these results: http://genomescope.org/analysis.p ...
genome genomescope contamination written 3 months ago by maxnest10
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RNA-seq of two non-model species: differential expression and FPKM
... Dear colleagues, I work with RNA-seq data of two non-model close species. For each species, I received 3 transcriptome from different life history phases, each in two biological replicate. Previously I have found orthologous sequences between two species, and now I want to determine which of the ort ...
fpkm compatative transcriptomics rna-seq written 11 months ago by maxnest10 • updated 11 months ago by c.chakraborty110
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kobasdb - problems
... Hello, collegues! I have some problems with program "kobas 2.0". Even if i try start test-example , on screen i have only this error message : maxnest@maxnest:~/Desktop/kobas2.0-20150126/test$ '/home/maxnest/Desktop/kobas2.0-20150126/scripts/annotate.py' -i '/home/maxnest/Desktop/kobas2.0-20150126 ...
db path kobas written 2.9 years ago by maxnest10
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KOBAS2.0 , problems
... Hello, dear colleagues! My apologies for my English. I have some problems with installation/starting of kobas2.0 and I hope somebody can help me. Followed the instructions , I installed all packages and programs (pip , biopython, rpy2, pysqlite, ncbi-blast-2.3.0+ (standalone version)), created fo ...
transcriptome kobas paths written 2.9 years ago by maxnest10

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Popular Question 8 weeks ago, created a question with more than 1,000 views. For KOBAS2.0 , problems
Popular Question 2.7 years ago, created a question with more than 1,000 views. For KOBAS2.0 , problems

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