User: maxnest

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maxnest10
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1 week, 5 days ago
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3 years, 5 months ago
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Posts by maxnest

<prev • 7 results • page 1 of 1 • next >
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Issues with interpretation of DESeq2 time series analysis results
... Dear colleagues, My research dedicated to transcriptomic analysis of regeneration process in two different sites (Head and Tail) of one invertebrate animal. Experiment design includes RNA-seq data from different time point: 0, 4, 12, 24, 48 and 96 hours. DESeq2 library was used to differential expre ...
deseq2 rna-seq lrt written 16 days ago by maxnest10 • updated 16 days ago by ATpoint21k
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Comment: A: RATT annotation transfer tool usage.
... Dear Mehmet, Could you tell us, have you finished manual for RATT? Unfortunately, i have some problems with RATT usage. Thanks ...
written 6 months ago by maxnest10
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Comment: A: GenomeScope analysis failed
... Dear colleagues, I am very grateful to you for the answers. Thank you so much for Kraken and BlobTools, this is exactly what I wanted to find. ...
written 9 months ago by maxnest10
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GenomeScope analysis failed
... Dear colleagues I was provided with sequencing data of a single protist genome. I used Jellyfish (-k 21 -m 35M) on the Trimmomatic libraries to estimate the approximate genome size. However, the analysis with the help of GenomeScope failed, and I get these results: http://genomescope.org/analysis.p ...
genome genomescope contamination written 9 months ago by maxnest10
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RNA-seq of two non-model species: differential expression and FPKM
... Dear colleagues, I work with RNA-seq data of two non-model close species. For each species, I received 3 transcriptome from different life history phases, each in two biological replicate. Previously I have found orthologous sequences between two species, and now I want to determine which of the ort ...
fpkm compatative transcriptomics rna-seq written 16 months ago by maxnest10 • updated 16 months ago by c.chakraborty130
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kobasdb - problems
... Hello, collegues! I have some problems with program "kobas 2.0". Even if i try start test-example , on screen i have only this error message : maxnest@maxnest:~/Desktop/kobas2.0-20150126/test$ '/home/maxnest/Desktop/kobas2.0-20150126/scripts/annotate.py' -i '/home/maxnest/Desktop/kobas2.0-20150126 ...
db path kobas written 3.4 years ago by maxnest10
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KOBAS2.0 , problems
... Hello, dear colleagues! My apologies for my English. I have some problems with installation/starting of kobas2.0 and I hope somebody can help me. Followed the instructions , I installed all packages and programs (pip , biopython, rpy2, pysqlite, ncbi-blast-2.3.0+ (standalone version)), created fo ...
transcriptome kobas paths written 3.4 years ago by maxnest10

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Popular Question 7 months ago, created a question with more than 1,000 views. For KOBAS2.0 , problems
Popular Question 3.2 years ago, created a question with more than 1,000 views. For KOBAS2.0 , problems

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