User: untitpoi

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untitpoi10
Reputation:
10
Status:
New User
Location:
France/Montpellier
Last seen:
1 year, 4 months ago
Joined:
4 years, 11 months ago
Email:
a***********@hotmail.fr

Posts by untitpoi

<prev • 4 results • page 1 of 1 • next >
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Comment: C: bcftools mpileup no output (empty calls.bcf file)
... Thanks for that answer, option -A solved my issue (void output) too! ...
written 16 months ago by untitpoi10
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Comment: C: rename reads in fastq files
... I agree that you should verify the absence of `_` in your quality sequence before to simply go for a `sed 's/_/\//g' `. because if there is you will change all your quality score coded `_` by a new existing score `\` ...
written 4.9 years ago by untitpoi10
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Comment: C: trouble in blasting the seq file
... Hi, Blast2go is not suitable for blasting sequences: it will take a long long time as you may have noticed. I recommend to go on local using NCBI-blast for the blast and use a cluster if your instutition owns one. You can get more info on the NCBI website. ...
written 4.9 years ago by untitpoi10
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Answer: A: curating a viridiplantae database
... Hi, I think using grep -A option could help you. It permits to get not only the line which match your pattern but also a number of line after it. Tough it is not the best solution if your fasta is not monoline which is often the case. ...
written 5.0 years ago by untitpoi10

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