... I am working on a database of many species.
And I found the chromosome names of ensembl and refseq are terrible to convert between each other.
I found there are tables named as ucscToEnsembl on UCSC, and they are great:
mysql --user=genome --host=genome-mysql.cse.ucsc.edu -A -N -e "select * from uc ...
written 7.7 years ago by
Ning-Yi Shao • 390
12 months ago by
max • 40
... I think the real stuff is the story beyond the theoretical signal. The signals are the direct clues of the selection story. But when the signal appears, we (I mean both computational biologist and wet lab biologist) should dig the story of the real world, the changing of exact environments and the c ...
... Here I met a problem when I just followed this post to extract blocks from MAF files. Saying, the content of MAF named chr1_fake.maf is:
s SpeciesA.chr1 0 50 + 547496 acACTTGTGGCAGCATTGAAGGCTTCACTCTTCCCCAAGGGATATTATTA
s SpeciesB.chr1 0 50 - 547496 acACTTG ...