User: sallyanndunn18

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Posts by sallyanndunn18

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Error using Mauve - Why have i encountered this error?
... I'm using Mauve to reorder contigs against a reference. My contigs were created using SPADES. I have just received this error and Mauve terminated and I'm not sure why. Sequence loaded successfully. Error creating sorted mer list. Using weight 15 mers for initial seeds. libc ++ abi.dyl ...
genome de novo de novo assembly contigs mauve written 2.5 years ago by sallyanndunn180 • updated 2.5 years ago by Dan D6.6k
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Comment: C: Interpretation of FASTQC results - do I need to trim my sequence?
... Sorry I meant to say a genome sequence. TGCTG is a sequence identified in the 'K mer content' with count 752200. ...
written 2.5 years ago by sallyanndunn180
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Answer: A: Interpretation of FASTQC results - do I need to trim my sequence?
... Thank you very much! Is it a problem that by sequence duplication is very high (44%)? ...
written 2.5 years ago by sallyanndunn180
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Interpretation of FASTQC results - do I need to trim my sequence?
... I am quality checking a gene sequence using FASTQC. It has given me warnings about the sequence duplication (44%), per base sequence content and kier content. Should I trim this sequence using trim galore or cut adapt to rectify these problems?? I tried this using q-30 and removing the adapter s ...
assembly sequencing trim illumina fastqc written 2.5 years ago by sallyanndunn180 • updated 2.5 years ago by chen1.7k

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