User: ahsan.raza.rana

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Posts by ahsan.raza.rana

<prev • 16 results • page 1 of 2 • next >
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Groseq data read count?
... I have just seen that: 1. read counts actually shows the coverage. 2. groseq bedgraph last column is the coverage means read count. I dont know read counts are coverage or there is any way to count the reads. Am I right or wrong? Please guide me. Its urgent Hi, I have to find the read count of G ...
next-gen written 3.7 years ago by ahsan.raza.rana40
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Comment: C: how to pool together biological replicates?
... How can I keep the common peaks between replicates? how to do this ? I have no idea? ...
written 3.7 years ago by ahsan.raza.rana40
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Comment: C: how to pool together biological replicates?
... thanks alot.I have sam files. Can i use samtools merge function to merge the sam files? ...
written 3.7 years ago by ahsan.raza.rana40
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how to pool together biological replicates?
... I have 2 biological replicates (Chip-Seq) and i want to know how to pool them together so that after pooling them together i may apply Homer to find peaks. I am doing it for the very 1st time thats y asking such a q. Now my q is : I have found the peaks of replicates separately by Homer. 1.How to ...
chip-seq written 3.7 years ago by ahsan.raza.rana40
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Answer: A: percent methylation in CHH file of Bismark?
... thanks alot. I am really grateful ...
written 3.7 years ago by ahsan.raza.rana40
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percent methylation in CHH file of Bismark?
... Hi, I have generated a file by cytosine report function in bismark to calculate even the non CpG methylated Cs(CHH,CHG). The file of CHH shown as follow: > chr1 3000001 - 0 0 CHH CNN chr1 3000006 + 0 0 CHH CTT chr1 3000011 + 0 0 CHH CTA chr1 3000015 - 0 0 CHH CA ...
next-gen written 3.7 years ago by ahsan.raza.rana40
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Comment: C: Illumina cpg probe ID conversion to chromosomal location?
... I dont know wether they have any mouse array or not? Does any one know? ...
written 3.8 years ago by ahsan.raza.rana40
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Comment: C: Relation between "MAPINFO" and "UCSC_CpG_Islands_Name" in Illumina manifest file
... I want to have methylation information(mouse probe ids)CpGmarker CoefficientTraining CoefficientTrainingShrunk varByCpG minByCpG maxByCpG medianByCpG medianByCpGYoung medianByCpGOld Gene_ID GenomeBuild Chr MapInfo SourceVersion TSS_Coordinate Gene_Strand Symbol Synonym Accession GID Annotation Produ ...
written 3.8 years ago by ahsan.raza.rana40
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Comment: C: Illumina cpg probe ID conversion to chromosomal location?
... so,from where can i get such type of info for mouse methyalted cpg.Can I use the cpgislands list from UCSC as probes for this purpose and can calculate such information by using some functions available in R package. ...
written 3.8 years ago by ahsan.raza.rana40
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Answer: A: Illumina cpg probe ID conversion to chromosomal location?
... so,from where can i get such type of info for mouse methyalted cpg.Can I use the cpgislands list from UCSC as probes for this purpose and can calculate such information by using some functions available in R package. ...
written 3.8 years ago by ahsan.raza.rana40

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