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3
votes
6
replies
6.5k
views
Download all chip-seq data of a cell type in ENCODE
ChIP-Seq
updated 17 months ago by 141k • written 7.8 years ago by ▴ 180
0
votes
1
reply
16k
views
Comment: Comment: Pararellization in GATK 4
2.6 years ago by izzy.yichao.cai ▴ 180
11
votes
21
replies
11k
views
6 follow
How to properly combine two bam files of a paired-end data
sequencing Paired-end
updated 2.7 years ago by • 0 • written 7.5 years ago by ▴ 180
0
votes
0
replies
11k
views
Comment: Comment: MuTect2 VCF file
2.8 years ago by izzy.yichao.cai ▴ 180
6
votes
9
replies
6.8k
views
6 follow
Merge two bigwig(+/- strand) files from RNA-seq
RNA-Seq next-gen sequencing
updated 4 months ago by ▴ 40 • written 6.9 years ago by ▴ 180
0
votes
0
replies
1.4k
views
Max retries exceed error in using API of NCBI dbSNP
SNP
updated 4.8 years ago by 20 • written 4.8 years ago by ▴ 180
0
votes
1
reply
4.4k
views
Comment: C: Kallisto will not produce .bam files
5.4 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
4.4k
views
Comment: C: Kallisto will not produce .bam files
5.4 years ago by izzy.yichao.cai ▴ 180
2
votes
4
replies
2.0k
views
Which software to use to map 100bp DNA sequence to genome
ChIP-Seq
updated 5.9 years ago by ★ 1.9k • written 8.1 years ago by ▴ 180
1
vote
5
replies
7.9k
views
Effective genome size of UCSC hg38
ChIP-Seq
updated 6.1 years ago by ▴ 90 • written 8.0 years ago by ▴ 180
1
vote
0
replies
1.2k
views
Comment: C: How to align reads to only one strand on a haploid reference genome?
6.3 years ago by izzy.yichao.cai ▴ 180
1
vote
2
replies
1.2k
views
How to align reads to only one strand on a haploid reference genome?
ChIP-Seq sequencing alignment genome
6.3 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
1.1k
views
Interaction calling using contact matrix
next-gen sequencing
6.9 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
6.8k
views
Comment: C: Merge two bigwig(+/- strand) files from RNA-seq
6.9 years ago by izzy.yichao.cai ▴ 180
1
vote
1
reply
6.8k
views
Comment: C: Merge two bigwig(+/- strand) files from RNA-seq
6.9 years ago by izzy.yichao.cai ▴ 180
1
vote
4
replies
2.2k
views
Weird Kmer at 5' of read 1 in paired-end RNA-seq
RNA-Seq sequencing next-gen
7.0 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
2.2k
views
Comment: C: Weird Kmer at 5' of read 1 in paired-end RNA-seq
7.0 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
1.5k
views
PET sequencing data analysis
sequencing
updated 7.4 years ago by 20 • written 7.6 years ago by ▴ 180
0
votes
1
reply
11k
views
Comment: C: How to properly combine two bam files of a paired-end data
7.5 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
11k
views
Comment: C: How to properly combine two bam files of a paired-end data
7.5 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
11k
views
Comment: C: How to properly combine two bam files of a paired-end data
7.5 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
11k
views
Comment: C: How to properly combine two bam files of a paired-end data
7.5 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
11k
views
Comment: C: How to properly combine two bam files of a paired-end data
7.5 years ago by izzy.yichao.cai ▴ 180
0
votes
2
replies
11k
views
Comment: C: How to properly combine two bam files of a paired-end data
7.5 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
2.2k
views
Comment: C: Problem when combine two sam file toghther
7.5 years ago by izzy.yichao.cai ▴ 180
0
votes
2
replies
2.2k
views
Problem when combine two sam file toghther
sequencing
7.5 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
3.6k
views
Comment: C: Can't convert pair-end bam to bedpe using bedtools bamtobed
7.5 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
3.6k
views
Comment: C: Can't convert pair-end bam to bedpe using bedtools bamtobed
7.5 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
3.6k
views
Comment: C: Can't convert pair-end bam to bedpe using bedtools bamtobed
7.5 years ago by izzy.yichao.cai ▴ 180
1
vote
6
replies
3.6k
views
Can't convert pair-end bam to bedpe using bedtools bamtobed
sequencing
7.5 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
15k
views
Comment: C: Can't convert paired end BAM to bed using bedtools
7.5 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
2.2k
views
Comment: C: Which statistical test should be applied in the association gene list
7.6 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
2.2k
views
Comment: C: Which statistical test should be applied in the association gene list
7.6 years ago by izzy.yichao.cai ▴ 180
2
votes
17
replies
2.2k
views
Which statistical test should be applied in the association gene list
gene
updated 7.6 years ago by 28k • written 7.6 years ago by ▴ 180
0
votes
1
reply
2.2k
views
Comment: C: Which statistical test should be applied in the association gene list
7.6 years ago by izzy.yichao.cai ▴ 180
3
votes
1
reply
2.6k
views
Non-infinite value in violin plot
R
7.6 years ago by izzy.yichao.cai ▴ 180
0
votes
0
replies
2.2k
views
Comment: C: Which statistical test should be applied in the association gene list
7.6 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
2.2k
views
Comment: C: Which statistical test should be applied in the association gene list
7.6 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
2.2k
views
Comment: C: Which statistical test should be applied in the association gene list
7.6 years ago by izzy.yichao.cai ▴ 180
4
votes
4
replies
11k
views
ChIP-seq peak calling & visualized in IGV
ChIP-Seq alignment genome
updated 7.6 years ago by ▴ 260 • written 8.0 years ago by ▴ 180
1
vote
0
replies
6.3k
views
Difference between blastp and phi-blast
genome
7.6 years ago by izzy.yichao.cai ▴ 180
15
votes
6
replies
6.8k
views
using bedtools to find the intersect of bedpe and bed
genome
updated 7.7 years ago by ▴ 20 • written 7.9 years ago by ▴ 180
0
votes
1
reply
6.5k
views
Comment: C: Download all chip-seq data of a cell type in ENCODE
7.8 years ago by izzy.yichao.cai ▴ 180
0
votes
1
reply
6.5k
views
Comment: C: Download all chip-seq data of a cell type in ENCODE
7.8 years ago by izzy.yichao.cai ▴ 180
0
votes
2
replies
6.8k
views
Comment: C: using bedtools to find the intersect of bedpe and bed
7.9 years ago by izzy.yichao.cai ▴ 180
2
votes
1
reply
5.7k
views
GSEA for RNA seq
RNA-Seq
updated 7.9 years ago by 20 • written 8.0 years ago by ▴ 180
2
votes
2
replies
2.9k
views
How to decide H3K27me3 peaks in promoter region
ChIP-Seq
updated 7.9 years ago by ★ 3.2k • written 7.9 years ago by ▴ 180
0
votes
0
replies
3.1k
views
Comment: C: Cant launch GSEA from web application using Ubuntu
8.0 years ago by izzy.yichao.cai ▴ 180
1
vote
4
replies
3.1k
views
Cant launch GSEA from web application using Ubuntu
gene
updated 8.0 years ago by 161k • written 8.0 years ago by ▴ 180
0
votes
0
replies
3.1k
views
Comment: C: Cant launch GSEA from web application using Ubuntu
8.0 years ago by izzy.yichao.cai ▴ 180
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