User: perezalquicira

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2 years, 10 months ago
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3 years, 2 months ago
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Posts by perezalquicira

<prev • 3 results • page 1 of 1 • next >
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Answer: A: SNP data in phylip format
... Hi, did you find the way to convert vcf file to phylip? I am dealing with the same problem. Does any one have any suggestions to convert vcf to phylip particularly to prepare infile for raxml? Thanks ...
written 2.9 years ago by perezalquicira10
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Answer: A: VCF filtering by depth
... Thanks Agata, I have mac and try to run the script and I got this message: Traceback (most recent call last): File "DP.py", line 3, in import vcf ImportError: No module named vcf ...
written 3.2 years ago by perezalquicira10
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VCF filtering by depth
... Hi, I am trying to filtering a vcf file by --minDP however the log file indicates that it is not filtering out any SNP, any clue about this problem? I tried different values for DP but is not working any of them (I do have DP information in my vcf file) /data/storage/software/vcftools/bin/vcftools ...
filtering by depth written 3.2 years ago by perezalquicira10

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