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Posts by hsbinf
... Hi All, I am trying to run bam-readcount but I get the following error in the "make" step of the installation. I am using cmake v3.4.3 The commands I used are: >git clone https://github.com/genome/bam-readcount.git >cmake bam-readcount/ > make Error: ...
... Hi, I'm trying to get input file for THetA 2 using CreateExomeInput command. I'm giving the segment file for this command as the Varscan 2 output file after CBS segmentation with these columns chr loc.start loc.end num.mark seg.mean ...
... Hi, I'm trying to run ABSOLUTE (on segmented file generated from VARSCAN + DNACopy) but I don't seem to be getting plots. I get this warning while running ABSOLUTE: Warning message: In MakeSegObj(seg.dat.fn, min_probes = min_probes, max_sd = max_sd, : NAs introduced by coercion And when I check se ...
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