User: hsbinf

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hsbinf20
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Posts by hsbinf

<prev • 13 results • page 2 of 2 • next >
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bam-readcount installation error
... Hi All, I am trying to run bam-readcount but I get the following error in the "make" step of the installation. I am using cmake v3.4.3 The commands I used are: >git clone https://github.com/genome/bam-readcount.git >cmake bam-readcount/ > make Error: ...
bam-readcount written 24 months ago by hsbinf20 • updated 24 months ago by h.mon27k
5
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1
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698
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1
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Running THetA2 with Varscan input?
... Hi, I'm trying to get input file for THetA 2 using CreateExomeInput command. I'm giving the segment file for this command as the Varscan 2 output file after CBS segmentation with these columns chr loc.start loc.end num.mark seg.mean ...
varscan theta tumorpurity written 2.2 years ago by hsbinf20 • updated 22 months ago by j.p.albrecht30
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ABSOLUTE : Plots not generated
... Hi, I'm trying to run ABSOLUTE (on segmented file generated from VARSCAN + DNACopy) but I don't seem to be getting plots. I get this warning while running ABSOLUTE: Warning message: In MakeSegObj(seg.dat.fn, min_probes = min_probes, max_sd = max_sd, : NAs introduced by coercion And when I check se ...
absolute whole exome sequencing written 2.3 years ago by hsbinf20

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Popular Question 3 months ago, created a question with more than 1,000 views. For bam-readcount installation error

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