User: jaynaythan

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jaynaythan10
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Posts by jaynaythan

<prev • 11 results • page 1 of 2 • next >
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Comment: C: How to correctly use E-fetch from E-utilities?
... Great thanks! Theres just really poor documentation of this. i would never have known! ...
written 4 months ago by jaynaythan10
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Comment: C: How to correctly use E-fetch from E-utilities?
... Hi Sej, i wonder if you can help me out. i am trying to download this data: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRR5070677&go=go But some fields are missing from the esearch results. Namely location and host. Do you know if its possible to include this info? ...
written 4 months ago by jaynaythan10
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Comment: C: How to correctly use E-fetch from E-utilities?
... OH. yes. You are right. Not sure what went wrong ...
written 4 months ago by jaynaythan10
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How to correctly use E-fetch from E-utilities?
... Hi, I am looking to download metadata from the SRA. I downloaded E-utilities following these instructions https://www.ncbi.nlm.nih.gov/books/NBK179288/ However, i cannot get E-fetch to work. I have a feeling i am using a differetn version of E-fethc to others. here is the 'help' page from m ...
ncbi sra e-utilities linux written 4 months ago by jaynaythan10
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Comment: C: How to download metadata from the SRA?
... For example, i cannot also get this command to work, form the examples page: esearch -db pubmed -query "lycopene cyclase" | efetch -format abstract https://www.ncbi.nlm.nih.gov/books/NBK179288/ ...
written 4 months ago by jaynaythan10
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Comment: C: How to download metadata from the SRA?
... Hi James What version of E utilities are you using? I am using 2.1 and this does not work for me.I am looking into why this might be! ...
written 4 months ago by jaynaythan10
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How to download metadata from the SRA?
... Hi, I am trying to download the accompanying metadata to a list of SRA runs. I would specifically like this type of data: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRR5070677&go=go which includes place of isolation and date of isolation and other such good metadata. Following the advice ...
ncbi sra metdata written 4 months ago by jaynaythan10
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Comment: C: Phylogenetic tree does not match SNP mapping results
... One would hope things have progressed in 5 years since that post! ...
written 19 months ago by jaynaythan10
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Comment: C: Phylogenetic tree does not match SNP mapping results
... Raxml. this is core genome alignment ...
written 19 months ago by jaynaythan10
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Comment: C: Phylogenetic tree does not match SNP mapping results
... It was aligned to a random genome in the list. Using the "-r !"Parsnp command ...
written 19 months ago by jaynaythan10

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