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Posts by segato.felipe
... Hello, You could use combat to correct for batch effects, remove genes absent in most samples and perform your DE analysis using a statistical test. We did this in our paper: (https://www.sciencedirect.com/science/article/pii/S221112471931455X) ...
... That's a great document. Thanks for sharing! Just to add to this, I like the WashU Epigenome Browser (http://epigenomegateway.wustl.edu/browser/) to visualize interaction data (HiC, HiChIP, etc) ...
... Hey, Since you're using R, I'd recommend the package "plot3D". It's a very flexible and easy to use package where you can do what you're looking for easily. ...
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