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answers
2
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1
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298
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Answer:
Answer: Before or after LD clumping for PRS calculation in GWAS
9 days ago by
Sam
★ 4.7k
0
votes
0
replies
362
views
Answer:
Answer: Interpretation of PRS scores calculated from PGS Catalog
6 weeks ago by
Sam
★ 4.7k
4
votes
0
replies
550
views
Answer:
Answer: Does anyone know which tool can I use to generate the chart in the picture?
5 months ago by
Sam
★ 4.7k
2
votes
1
reply
606
views
Answer:
Answer: Calculating height prediction from PGS
9 weeks ago by
Sam
★ 4.7k
1
vote
0
replies
605
views
Answer:
Answer: Genetic risk score calculated using SNPs with mixed effect directions
13 months ago by
Sam
★ 4.7k
0
votes
0
replies
805
views
Answer:
Answer: Manual Polygenic Risk Score calculation
13 months ago by
Sam
★ 4.7k
0
votes
0
replies
710
views
Answer:
Answer: PLINK - tutorial - PRS calculation
15 months ago by
Sam
★ 4.7k
0
votes
0
replies
740
views
Answer:
Answer: instead of linear regression, do logistic regression plink prs tutorial.
15 months ago by
Sam
★ 4.7k
2
votes
0
replies
505
views
Answer:
Answer: Get variant type from genotype data
16 months ago by
Sam
★ 4.7k
3
votes
1
reply
867
views
Answer:
Answer: PRSice-2 Documentation
17 months ago by
Sam
★ 4.7k
4
votes
1
reply
1.2k
views
Answer:
Answer: What is the best way to read PLINK .raw format files into R?
17 months ago by
Sam
★ 4.7k
0
votes
0
replies
757
views
Answer:
Answer: PRSice: Error in getopt(spec = spec, opt = args) : long flag "cov" is ambiguous
18 months ago by
Sam
★ 4.7k
2
votes
1
reply
531
views
Answer:
Answer: Number of SNPs included in the PRS calculation (PRSice)
23 months ago by
Sam
★ 4.7k
1
vote
1
reply
697
views
Answer:
Answer: PRSice clumping was not processed for almost 9 hours with a stopped progress rat
24 months ago by
Sam
★ 4.7k
1
vote
1
reply
639
views
Answer:
Answer: Polygenic risk scores from different GWAS studies
2.0 years ago by
Sam
★ 4.7k
2
votes
1
reply
1.1k
views
Answer:
Answer: Help a beginner, results from plink logistic regression don't seem to make sense
updated 12 months ago by
Ram
43k • written 2.1 years ago by
Sam
★ 4.7k
3
votes
0
replies
800
views
Answer:
Answer: PLINK dosage gives some "NA"s for dichotomic and continuous outcome after analys
2.1 years ago by
Sam
★ 4.7k
0
votes
1
reply
930
views
Answer:
Answer: How do I use PLINK to filter out SNPs?
2.1 years ago by
Sam
★ 4.7k
3
votes
1
reply
1.4k
views
Answer:
Answer: Merge Score in plink
2.1 years ago by
Sam
★ 4.7k
2
votes
1
reply
1.5k
views
Answer:
Answer: How to open the genotype information in a bed file in R or Ubuntu
2.2 years ago by
Sam
★ 4.7k
0
votes
1
reply
2.4k
views
Answer:
Answer: Clumping error Plink
2.2 years ago by
Sam
★ 4.7k
2
votes
0
replies
605
views
Answer:
Answer: Difference between LDpred1,PT+Clump,Lassosum methods
2.2 years ago by
Sam
★ 4.7k
3
votes
1
reply
1.7k
views
Answer:
Answer: Polygenic Risk Score Calculation: Do we need to apply the same p-value threshold
2.2 years ago by
Sam
★ 4.7k
1
vote
3
replies
3.6k
views
Answer:
Answer: How to add phenotypic data to .fam in plink (specifically, assign 1 and 2 to cas
2.3 years ago by
Sam
★ 4.7k
2
votes
0
replies
740
views
Answer:
Answer: Liftover using gVCF
2.3 years ago by
Sam
★ 4.7k
1
vote
0
replies
746
views
Answer:
Answer: How can I make sure certain SNPs are not removed during the clumping stage of PR
2.3 years ago by
Sam
★ 4.7k
0
votes
1
reply
1.7k
views
Answer:
Answer: Polygenetic Risk Score Calculation
2.3 years ago by
Sam
★ 4.7k
1
vote
0
replies
3.5k
views
Answer:
Answer: nextflow DSL2: best practice to design and reuse a process/worfklow
2.3 years ago by
Sam
★ 4.7k
2
votes
1
reply
2.6k
views
Answer:
Answer: Calculating polygenic score using plink
2.3 years ago by
Sam
★ 4.7k
2
votes
1
reply
1.5k
views
Answer:
Answer: Many SNPs getting excluded during PRSice 2 analysis
2.3 years ago by
Sam
★ 4.7k
2
votes
0
replies
906
views
Answer:
Answer: PRSice 2 results
2.3 years ago by
Sam
★ 4.7k
0
votes
0
replies
1.1k
views
Answer:
Answer: How to analyze genotype data and imputed data in GWAS study
2.3 years ago by
Sam
★ 4.7k
2
votes
1
reply
1.1k
views
Answer:
Answer: Getting error at the clumping stage of PRSice 2
2.4 years ago by
Sam
★ 4.7k
2
votes
1
reply
887
views
Answer:
Answer: Polygenic scores in diabetic individuals across UKBB
2.4 years ago by
Sam
★ 4.7k
5
votes
1
reply
2.4k
views
Answer:
Answer: how to improve PCA visualization using ggplot?
2.4 years ago by
Sam
★ 4.7k
2
votes
1
reply
1.6k
views
Answer:
Answer: (LDSC) - Munge Error - ValueError: could not convert string to float: OR
2.4 years ago by
Sam
★ 4.7k
2
votes
1
reply
3.0k
views
Answer:
Answer: PRSice 2
2.4 years ago by
Sam
★ 4.7k
0
votes
0
replies
565
views
Answer:
Answer: Using IMPUTED genotype data from UK Biobank to generate PRS scores using PRSice
2.4 years ago by
Sam
★ 4.7k
1
vote
0
replies
658
views
Answer:
Answer: shell --- while
2.4 years ago by
Sam
★ 4.7k
0
votes
0
replies
984
views
Answer:
Answer: shell --array in while loop
2.4 years ago by
Sam
★ 4.7k
2
votes
1
reply
985
views
Answer:
Answer: PRS from a dataset on which the GWAS is based on
2.5 years ago by
Sam
★ 4.7k
0
votes
0
replies
4.0k
views
Answer:
Answer: PRS in UK Biobank - no covariate file and no phenotype file
2.5 years ago by
Sam
★ 4.7k
2
votes
0
replies
763
views
Answer:
Answer: Remove text and add a string in odd rows in a fasta file using awk
2.5 years ago by
Sam
★ 4.7k
1
vote
1
reply
1.0k
views
Answer:
Answer: Polygenic Risk Score Plot
2.6 years ago by
Sam
★ 4.7k
1
vote
0
replies
1.0k
views
Answer:
Answer: extracting a gene from a gmt file
2.6 years ago by
Sam
★ 4.7k
1
vote
1
reply
688
views
Answer:
Answer: PLINK ASSOC understanding the results
2.6 years ago by
Sam
★ 4.7k
0
votes
1
reply
4.9k
views
Answer:
Answer: Trying to read multiple CSV files in a folder and add filename to each column in
2.6 years ago by
Sam
★ 4.7k
2
votes
1
reply
2.2k
views
Answer:
Answer: How to replace multiple string columns to binary values (0 and 1) in a dataframe
2.6 years ago by
Sam
★ 4.7k
2
votes
1
reply
1.9k
views
Answer:
Answer: color coded PCA plot in R for a combined set
2.7 years ago by
Sam
★ 4.7k
0
votes
1
reply
3.0k
views
Answer:
Answer: How to calculate R2 from GWAS summary statistics?
2.7 years ago by
Sam
★ 4.7k
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