User: Adam

gravatar for Adam
Adam40
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40
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New User
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1 month, 1 week ago
Joined:
4 years, 3 months ago
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a********@poczta.fm

Posts by Adam

<prev • 29 results • page 1 of 3 • next >
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Comment: C: How to change sequence format in my alignment file?
... I was looking for full sequences but I'll be content with this result ...
written 6 weeks ago by Adam40
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Comment: C: How to change sequence format in my alignment file?
... MEGA crashed during export (xls, xlsx). Csv went fine but only 1kb have been exported. I have alignment of 40 sequences, ~25kb each. BioEdit - I was abe to change letters to dots, but each export always contained letters. CodonCode - here I exported what I want but only positions with changes. ...
written 6 weeks ago by Adam40
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Comment: C: How to change sequence format in my alignment file?
... Thanks, i got it. But I'm still undable to save it (dots instead of nucleotides) ...
written 6 weeks ago by Adam40
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Comment: C: How to change sequence format in my alignment file?
... Yes, I installed it and it does't even start... ...
written 6 weeks ago by Adam40
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How to change sequence format in my alignment file?
... Hello, I have fasta file with alingned several sequences (from MUSCLE), when I open it (e.g. notepad++) they look like: ![this][1] And I want dot format of identities like ![this][2] and then save it in txt file. I failed using MEGA, BioEdit and CodonCode, how can I do this? [1]: https: ...
sequence alignment written 6 weeks ago by Adam40 • updated 9 days ago by Biostar ♦♦ 20
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Healthy controls - samples Illumina 450k methylation
... Hello, I'd like to find some differentialy methylated tags of one particular disease, currently I'm using two databases: https://xena.ucsc.edu/ https://portal.gdc.cancer.gov/ I found whole methylation profile (already normalized data) Beta values of dozens of samples. Nevertheless I can't find a ...
tcga methylation written 19 months ago by Adam40 • updated 19 months ago by Biostar ♦♦ 20
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Comment: C: Two microarray experiments comparison, removing the batch effect
... Actually, all I was needed... https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-335 ...
written 19 months ago by Adam40
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Comment: C: Two microarray experiments comparison, removing the batch effect
... By merging I meant all .CEL files (from two experiments) being normalized together to obtain one expression set that contains all samples. I think that such merging isn't allowed, I'd like to avoid aby bias in my final results. ...
written 19 months ago by Adam40
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Two microarray experiments comparison, removing the batch effect
... Hello, at first, I'd like to mention that smillar questions have been asked several times. However I decided to ask once again because I didin't find satysfying answer, and all present questions are old ~asked over 5 years ago. So could you give me advice, I don't want a ready solution. I have two ...
microarray affymetrix written 19 months ago by Adam40
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Gene symbols - NimbleGen microarray annotation
... Hello, I'd like to make some annotation of methylation microarray by NimbleGen. I have preprocessed data from GEO Let's take this one: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSM565262 All I need is gene name/symbol in each row... Unfortunately I didn't find any usefull annotation pac ...
annotation methylation microarray written 20 months ago by Adam40

Latest awards to Adam

Popular Question 19 months ago, created a question with more than 1,000 views. For Software or tool for microRNA full ontology?
Popular Question 19 months ago, created a question with more than 1,000 views. For Visualize groups of conditions bys MDS.
Popular Question 19 months ago, created a question with more than 1,000 views. For Custom miRNA - target gene prediction by miRNA sequence
Popular Question 19 months ago, created a question with more than 1,000 views. For How to obtain rs ID having genomic position
Popular Question 19 months ago, created a question with more than 1,000 views. For Visualize groups of conditions bys MDS.

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