User: schlogl

gravatar for schlogl
schlogl70
Reputation:
70
Status:
Trusted
Location:
Brazil-Florianopolis
Last seen:
1 day, 3 hours ago
Joined:
4 years, 11 months ago
Email:
s******@hotmail.com

Posts by schlogl

<prev • 87 results • page 2 of 9 • next >
0
votes
0
answers
260
views
0
answers
Comment: C: I am trying to select some reference genome region of a bam file, but got an err
... You got it bro. Thank you so much! 8) ...
written 6 months ago by schlogl70
0
votes
0
answers
260
views
0
answers
Comment: C: I am trying to select some reference genome region of a bam file, but got an err
... The result is: samtools idxstats sorted_SRR1972739.bwa.bam AF086833.2 18959 15279 11 * 0 0 5450 ...
written 6 months ago by schlogl70
0
votes
0
answers
260
views
0
answers
Comment: C: I am trying to select some reference genome region of a bam file, but got an err
... Hi bro...well! I tried that but didn't work too Genomax! 8( ...
written 6 months ago by schlogl70
0
votes
0
answers
260
views
0
answers
Comment: C: I am trying to select some reference genome region of a bam file, but got an err
... Yep! Look here http://www.htslib.org/doc/samtools-view.html[1] [1]: http://www.htslib.org/doc/samtools-view.html ...
written 6 months ago by schlogl70 • updated 6 months ago by lieven.sterck10k
0
votes
0
answers
260
views
0
answers
Comment: C: I am trying to select some reference genome region of a bam file, but got an err
... sorry. Thank you. Paulo ...
written 6 months ago by schlogl70
9
votes
0
answers
260
views
0
answers
I am trying to select some reference genome region of a bam file, but got an error
... Hi there, I am trying to use this command: samtools view -b sorted_SRR1972739.bwa.bam AF086833:3050-3199 > selected.bam And got this error: [main_samview] region "AF086833:3050" specifies an unknown reference name. Continue anyway. Using this command: samtools view -c selected.ba ...
samtools written 6 months ago by schlogl70 • updated 6 months ago by lieven.sterck10k
0
votes
0
answers
523
views
0
answers
I update R to version 4 and Rstudio crashes when I try to open a project
... Hi there I installed the version 4.0 of R and now my Rstudio (update to 1.3.959) but when I try to open a project It crashes. Anyone here have some experience or had the same problem? I did google it but did not find any help. If you can give some directions I would appreciate. Thanks ...
R rstudio written 7 months ago by schlogl70
0
votes
1
answer
302
views
1
answers
Answer: A: DNA stadistical studies- Local Base Composition Code
... def get_kmers_counts(sequence, k=1): """Returns the count of all the contiguous and overlapping substrings of length K from a genome.""" return Counter(sequence[i:i+k] for i in range(len(sequence) - k + 1)) def get_kmers_frequencies(sequence, k=1): """Ret ...
written 7 months ago by schlogl70
0
votes
2
answers
682
views
2
answers
Comment: C: metabat installation problem with conda
... I have conda installed. conda install -c bioconda or conda-forge... but now I have ot that error message. I will check if I get that lib. ...
written 11 months ago by schlogl70
3
votes
2
answers
682
views
5 follow
2
answers
metabat installation problem with conda
... Hi guys I tried to install metabat2 with conda however when I tried to use I got this error: metabat2: error while loading shared libraries: libdeflate.so.0: cannot open shared object file: No such file or directory Then I was check the site of the program and the installation says: #stab ...
software error written 11 months ago by schlogl70 • updated 10 months ago by omoyne10

Latest awards to schlogl

Popular Question 25 days ago, created a question with more than 1,000 views. For Turning Seq objects into strings
Popular Question 7 weeks ago, created a question with more than 1,000 views. For Need tips about using the dbNSFP database in my PC
Popular Question 5 months ago, created a question with more than 1,000 views. For There are any python alternative to bioconductor?
Popular Question 14 months ago, created a question with more than 1,000 views. For Need tips about using the dbNSFP database in my PC
Scholar 14 months ago, created an answer that has been accepted. For A: Get some errors in a biopython code for split a multifasta genomic file
Supporter 14 months ago, voted at least 25 times.
Scholar 14 months ago, created an answer that has been accepted. For A: Get some errors in a biopython code for split a multifasta genomic file
Scholar 15 months ago, created an answer that has been accepted. For A: Get some errors in a biopython code for split a multifasta genomic file
Scholar 16 months ago, created an answer that has been accepted. For A: Get some errors in a biopython code for split a multifasta genomic file
Popular Question 21 months ago, created a question with more than 1,000 views. For Need tips about using the dbNSFP database in my PC

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2149 users visited in the last hour
_