User: schlogl
schlogl • 70
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... You got it bro.
Thank you so much!
8) ...
written 6 months ago by
schlogl • 70
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... The result is:
samtools idxstats sorted_SRR1972739.bwa.bam
AF086833.2 18959 15279 11
* 0 0 5450
...
written 6 months ago by
schlogl • 70
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... Hi bro...well!
I tried that but didn't work too Genomax!
8( ...
written 6 months ago by
schlogl • 70
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... Yep! Look here
http://www.htslib.org/doc/samtools-view.html[1]
[1]: http://www.htslib.org/doc/samtools-view.html ...
written 6 months ago by
schlogl • 70
• updated
6 months ago by
lieven.sterck ♦ 10k
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... sorry. Thank you. Paulo ...
written 6 months ago by
schlogl • 70
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... Hi there,
I am trying to use this command:
samtools view -b sorted_SRR1972739.bwa.bam AF086833:3050-3199 > selected.bam
And got this error:
[main_samview] region "AF086833:3050" specifies an unknown reference name. Continue anyway.
Using this command:
samtools view -c selected.ba ...
written 6 months ago by
schlogl • 70
• updated
6 months ago by
lieven.sterck ♦ 10k
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... Hi there I installed the version 4.0 of R and now my Rstudio (update to 1.3.959) but when I try to open a project It crashes.
Anyone here have some experience or had the same problem?
I did google it but did not find any help.
If you can give some directions I would appreciate.
Thanks ...
written 7 months ago by
schlogl • 70
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... def get_kmers_counts(sequence, k=1):
"""Returns the count of all the contiguous and overlapping
substrings of length K from a genome."""
return Counter(sequence[i:i+k] for i in range(len(sequence) - k + 1))
def get_kmers_frequencies(sequence, k=1):
"""Ret ...
written 7 months ago by
schlogl • 70
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... I have conda installed.
conda install -c bioconda or conda-forge...
but now I have ot that error message. I will check if I get that lib. ...
written 11 months ago by
schlogl • 70
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5 follow
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... Hi guys I tried to install metabat2 with conda however when I tried to use I got this error:
metabat2: error while loading shared libraries: libdeflate.so.0: cannot open shared object file: No such file or directory
Then I was check the site of the program and the installation says:
#stab ...
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